YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9755727, gi\|3...
Organism:	Arabidopsis thaliana
Length:	876 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9755727, gi|3....

Description	E-value	Query Range	Subject Range
gi\|148658115, gi... - gi\|148658115\|ref\|YP_001278320.1\| NB-ARC domain-containing protein [Roseiflexus sp. RS-1], gi\|1485702...	869.0	[0..52]	[870..729]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	740.0	[0..61]	[753..865]
gi\|118397021 - gi\|118397021\|ref\|XP_001030846.1\| hypothetical protein TTHERM_01006540 [Tetrahymena thermophila] gi\|118397021, gi... - gi\|89285162\|gb\|EAR83183.1\| hypothetical protein TTHERM_01006540 [Tetrahymena thermophila SB210], gi\|...	736.0	[0..26]	[876..1673]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	727.0	[0..95]	[751..1165]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	718.0	[0..1]	[662..1024]
gi\|110168368, gi... - gi\|71673858\|ref\|ZP_00671606.1\| G-protein beta WD-40 repeat [Trichodesmium erythraeum IMS101], gi\|716...	696.0	[0..13]	[711..838]

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Predicted Domain #1

Region A:
Residues: [1-57]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPHSLKKNY RCSRSLKQFY GGGPFIVSSD GSFIACACGD VINIVDSTDS SVKSTIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.39794
Match:	1erjA
Description:	Tup1, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [58-331]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GESDTLTALA LSPDDKLLFS AGHSRQIRVW DLETLKCIRS WKGHEGPVMG MACHASGGLL  60
   61 ATAGADRKVL VWDVDGGFCT HYFRGHKGVV SSILFHPDSN KNILISGSDD ATVRVWDLNA 120
  121 KNTEKKCLAI MEKHFSAVTS IALSEDGLTL FSAGRDKVVN LWDLHDYSCK ATVATYEVLE 180
  181 AVTTVSSGTP FASFVASLDQ KKSKKKESDS QATYFITVGE RGVVRIWKSE GSICLYEQKS 240
  241 SDITVSSDDE ESKRGFTAAA MLPSDHGLLC VTAD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.69897
Match:	2oajA
Description:	No description for 2oajA was found.

Predicted Domain #3

Region A:
Residues: [332-387]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQFFFYSVVE NVEETELVLS KRLVGYNEEI ADMKFLGDEE QFLAVATNLE EVRVYD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.045757
Match:	3bg0A
Description:	No description for 3bg0A was found.

Predicted Domain #4

Region A:
Residues: [388-646]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VATMSCSYVL AGHKEVVLSL DTCVSSSGNV LIVTGSKDKT VRLWNATSKS CIGVGTGHNG  60
   61 DILAVAFAKK SFSFFVSGSG DRTLKVWSLD GISEDSEEPI NLKTRSVVAA HDKDINSVAV 120
  121 ARNDSLVCTG SEDRTASIWR LPDLVHVVTL KGHKRRIFSV EFSTVDQCVM TASGDKTVKI 180
  181 WAISDGSCLK TFEGHTSSVL RASFITDGTQ FVSCGADGLL KLWNVNTSEC IATYDQHEDK 240
  241 VWALAVGKKT EMIATGGGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.69897
Match:	2vduB
Description:	No description for 2vduB was found.

Predicted Domain #5

Region A:
Residues: [647-706]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVINLWHDST ASDKEDDFRK EEEAILRGQE LENAVLDAEY TKAIRLAFEL CRPHKVFELF  60
   61

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	78.0
Match:	2ovpB
Description:	No description for 2ovpB was found.

Predicted Domain #6

Region A:
Residues: [707-876]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGLCRKRDSD EQIVKALQGL EKEEFRLLFE YVREWNTKPK LCHIAQFVLY KTFNILPPTE  60
   61 IVQVKGIGEL LEGLIPYSQR HFSRIDRFVR SSFLLDYTLG EMSVIDPETV ETEYPKDEKK 120
  121 KEKDVIAAME QDTDELKQET PSRKRKSQKS KGKSNKKRLI AEAQGSVIAV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	39.468521
Match:	PF08625.3
Description:	No description for PF08625.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits