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View Structure Prediction Details

Protein: TIP13_ARATH
Organism: Arabidopsis thaliana
Length: 252 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIP13_ARATH.

Description E-value Query
Range		 Subject
Range
gi|115459788, gi... - gi|50927737|ref|XP_473424.1| OSJNBb0034G17.15 [Oryza sativa (japonica cultivar-group)], gi|38605857|...
 258.0 [0..3] [244..1]

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Predicted Domain #1
Region A:
Residues: [1-252] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPINRIAIGT PGEASRPDAI RAAFAEFFSM VIFVFAGQGS GMAYGKLTGD GPATPAGLVA  60
   61 ASLSHAFALF VAVSVGANVS GGHVNPAVTF GAFIGGNITL LRAILYWIAQ LLGAVVACLL 120
  121 LKVSTGGMET AAFSLSYGVT PWNAVVFEIV MTFGLVYTVY ATAVDPKKGD IGIIAPLAIG 180
  181 LIVGANILVG GAFDGASMNP AVSFGPAVVS WIWTNHWVYW VGPFIGAAIA AIVYDTIFIG 240
  241 SNGHEPLPSN DF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.69897
Match: 1fqyA
Description: Aquaporin-1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
water transmembrane transporter activity 10.3414560257964 bayes_pls_golite062009
water channel activity 10.2169080705067 bayes_pls_golite062009
transporter activity 5.23077472964938 bayes_pls_golite062009
substrate-specific channel activity 5.0695479460357 bayes_pls_golite062009
substrate-specific transporter activity 5.06520190871345 bayes_pls_golite062009
passive transmembrane transporter activity 5.06054430984045 bayes_pls_golite062009
channel activity 5.06054430984045 bayes_pls_golite062009
transmembrane transporter activity 4.83314424546299 bayes_pls_golite062009
glycerol channel activity 4.65460547189577 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 2.82456291801633 bayes_pls_golite062009
pyrimidine transmembrane transporter activity 2.42183378687544 bayes_pls_golite062009
organic acid transmembrane transporter activity 1.57078059027065 bayes_pls_golite062009
carboxylic acid transmembrane transporter activity 1.57017437613762 bayes_pls_golite062009
amine transmembrane transporter activity 1.10865678129643 bayes_pls_golite062009
nucleobase transmembrane transporter activity 0.911381096418279 bayes_pls_golite062009
purine transmembrane transporter activity 0.911381096418279 bayes_pls_golite062009
polyol transmembrane transporter activity 0.820388351311438 bayes_pls_golite062009
alcohol transmembrane transporter activity 0.820388351311438 bayes_pls_golite062009
binding 0.594828249640241 bayes_pls_golite062009
glycerol transmembrane transporter activity 0.545299611300918 bayes_pls_golite062009
ion transmembrane transporter activity 0.516648340085278 bayes_pls_golite062009
active transmembrane transporter activity 0.315342449421593 bayes_pls_golite062009
protein binding 0.259978052253245 bayes_pls_golite062009
cation transmembrane transporter activity 0.141210715822635 bayes_pls_golite062009
urea transmembrane transporter activity 0.0622228361021011 bayes_pls_golite062009
urea channel activity 0.0622228361021011 bayes_pls_golite062009
amide transmembrane transporter activity 0.0622228361021011 bayes_pls_golite062009
metal ion transmembrane transporter activity 0.0368961725897963 bayes_pls_golite062009
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