YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RS191_ARATH
Organism: Arabidopsis thaliana
Length: 143 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS191_ARATH.

Description E-value Query
Range
Subject
Range
gi|114677415 - gi|114677415|ref|XP_512692.2| PREDICTED: similar to ribosomal protein S19 [Pan troglodytes]
261.0 [0..5] [141..90]

Back

Predicted Domain #1
Region A:
Residues: [1-143]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS  60
   61 MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI ARHILQQLET MNIVELDTKG 120
  121 GRRITSSGQR DLDQVAGRIA VEP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 52.522879
Match: 2v7fA
Description: No description for 2v7fA was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 5.29433336630028 bayes_pls_golite062009
structural molecule activity 5.07265721693681 bayes_pls_golite062009
transcription regulator activity 4.44907471960058 bayes_pls_golite062009
nucleic acid binding 3.97631536825798 bayes_pls_golite062009
DNA binding 3.93431504495991 bayes_pls_golite062009
binding 3.52874320222492 bayes_pls_golite062009
transcription factor activity 3.48782936574155 bayes_pls_golite062009
sequence-specific DNA binding 2.44917636781125 bayes_pls_golite062009
transcription activator activity 2.35901958718112 bayes_pls_golite062009
RNA binding 1.88227222208129 bayes_pls_golite062009
protein binding 1.80415286835431 bayes_pls_golite062009
transcription repressor activity 1.54960543048317 bayes_pls_golite062009
RNA polymerase II transcription factor activity 1.2152419300113 bayes_pls_golite062009
transcription factor binding 0.13558561552621 bayes_pls_golite062009
ligase activity 0.104213649382856 bayes_pls_golite062009
mRNA binding 0.036043970189533 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle