YRC Public Data Repository - Protein Structure Prediction

Protein:	PUSH_ARATH
Organism:	Arabidopsis thaliana
Length:	510 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUSH_ARATH.

Description	E-value	Query Range	Subject Range
PUS1_YEAST - tRNA pseudouridine synthase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PUS1 PE=1 ... gi\|151942589 - gi\|151942589\|gb\|EDN60935.1\| tRNA-pseudouridine synthase [Saccharomyces cerevisiae YJM789] PUS1 - tRNA:pseudouridine synthase, introduces pseudouridines at positions 26-28, 34-36, 65, and 67 of tRNA... gi\|190407751 - gi\|190407751\|gb\|EDV11016.1\| tRNA pseudouridine synthase [Saccharomyces cerevisiae RM11-1a]	329.0	[0..34]	[500..52]
PUS1_ASHGO - tRNA pseudouridine synthase 1 OS=Ashbya gossypii GN=PUS1 PE=3 SV=1 PUS1_ASHGO - tRNA pseudouridine synthase 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL ...	324.0	[0..17]	[489..25]
gi\|40738761, gi\|... - gi\|67539990\|ref\|XP_663769.1\| hypothetical protein AN6165.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	318.0	[0..13]	[502..25]
PUS1_CANGA - tRNA pseudouridine synthase 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622... PUS1_CANGA - tRNA pseudouridine synthase 1 OS=Candida glabrata GN=PUS1 PE=3 SV=1	311.0	[0..26]	[505..56]
pus1 - tRNA pseudouridylate synthase Lsp1 PUS1_SCHPO - tRNA pseudouridine synthase 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pus1 PE=1 SV...	297.0	[0..58]	[497..39]
gi\|25518568, gi\|... - gi\|9558589\|gb\|AAF88152.1\|AC026234_3 Contains similarity to a pseudouridine synthase 1 from Homo sapi...	292.0	[0..34]	[464..29]
gi\|71022667, gi\|... - gi\|71022667\|ref\|XP_761563.1\| hypothetical protein UM05416.1 [Ustilago maydis 521], ref\|XP_403031.1\| ...	290.0	[0..26]	[460..86]
gi\|165971639, gi... - gi\|165971639\|gb\|AAI58694.1\| Pseudouridylate synthase 3 [Rattus norvegicus], gi\|157822367\|ref\|NP_0011...	280.0	[0..12]	[380..15]
PUS3_MOUSE - tRNA pseudouridine(38/39) synthase OS=Mus musculus GN=Pus3 PE=1 SV=2	280.0	[0..12]	[380..15]

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Predicted Domain #1

Region A:
Residues: [1-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVSFLRIPI PSRVFWYPTR LIRVTPALLR FSSSAAFQPS STSLSPPSSD NFLADKWESY  60
   61 RKKKVVIRIG YVGTDYRGLQ IQRDDPSIKT IEGELEVAIY KAGGIRDSNY GDLHKIGWAR 120
  121 SSRTDKGVHS LATSISLKME IPETAWKDDP QGTVLAKCIS KHLPENIRVF SVLPSNRRFD 180
  181 PRRECTLRKY SYLLPVDVLG IKNSFTSDEI DYHITDFNEI LKEFEGEYPF HNYTQRSRYR 240
  241 RKSEQKIKQR NGRPPREPKS IKASESEFRE ENHIEIGEEE EEKEVDGESD EHVVTPDSDN 300
  301 SQVYSRAKWL YEPDETDKIS GAHFRKVFRC RSGKLENS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	2nqpA
Description:	No description for 2nqpA was found.

Predicted Domain #2

Region A:
Residues: [339-418]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGFGFVEISI WGESFMLHQI RKMIGTAVAV KRELLPRDII RLSLNKFTRI VLPLAPSEVL  60
   61 ILRGNSFEVR RLPERPGMEA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.38
Match:	1vs3A
Description:	No description for 1vs3A was found.

Predicted Domain #3

Region A:
Residues: [419-510]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGESEEVEKE IEEFYRAVMV PQVSIFLDSE KSPWKEWVDH LDRNDGLIDE ELEDVRKGWE  60
   61 EWKAAKPWMN LKKTEDDEEA LSSVSVPIHQ AL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.890	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.890	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.737	N/A	N/A	a.7.8	GAT domain
View	Download	0.722	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.639	N/A	N/A	a.247.1	Description not found.
View	Download	0.615	N/A	N/A	a.64.1	Saposin
View	Download	0.615	N/A	N/A	a.64.1	Saposin
View	Download	0.610	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.610	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.595	N/A	N/A	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.507	N/A	N/A	a.159.4	Description not found.
View	Download	0.401	N/A	N/A	a.37.1	A DNA-binding domain in eukaryotic transcription factors
View	Download	0.353	N/A	N/A	a.159.1	Protein serine/threonine phosphatase 2C, C-terminal domain
View	Download	0.337	N/A	N/A	a.159.1	Protein serine/threonine phosphatase 2C, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits