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Protein Overview: gi|25518568, gi|...

General Information:
Name(s) found: gi|9558589 [NCBI NR]
gi|25518568 [NCBI NR]
gi|18394855 [NCBI NR]
gi|16323470 [NCBI NR]
gi|14334544 [NCBI NR]
Description(s) found:
Found 16 descriptions.
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  • gi|9558589|gb|AAF88152.1|AC026234_3 Contains similarity to a pseudouridine synthase 1 from Homo sapiens gi|4455035 and contains tRNA pseudoridine synthase PF|01416 domain. ESTs gb|T76494, gb|W43440 come from this gene. [Arabidopsis thaliana] [NCBI NR]
  • pir||E86337 hypothetical protein F14O10.3 - Arabidopsis thaliana [NCBI NR]
  • gi|18394855|ref|NP_564112.1| tRNA pseudouridine synthase family protein [Arabidopsis thaliana] [NCBI NR]
  • gi|16323470|gb|AAL15229.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
  • gi|14334544|gb|AAK59680.1| unknown protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 549 amino acids

    Gene Ontology:
    Cellular Component: cellular_component [ND]
    Biological Process: pseudouridine synthesis [IEA]
    tRNA processing [IEA]
    Molecular Function: pseudouridine synthase activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENQEPDIEK LPRDDVPDRE PDHKKLKIST TGQETDSSAV TTGGSNVAER RAPKYRRRKV  60
   61 AIVFAFCGVG YQGMQKNPGA KTIEGELEEA LFHAGAVPDA DRNKPRNYEW ARSARTDKGV 120
  121 SAVGQVVSGR FYVDPPGFVE RLNSKLPDQI RVFGYKRVAP SFSSKKFCDR RRYVYLIPVF 180
  181 ALDPCVHGEA EMVRTDLGYE YVKCVECSEK GYKIPLGVMG KDTDCCDTKS LEIQSDISSS 240
  241 TCDAIGADVK CETLSSSVPS AENNLNSEVL DGADVSALSS KAEGMEESNT LAKVEMNNGE 300
  301 GEDMTKSESK FCYGEKEKER FNRILSYYVG SHNFHNFTTR TKAADPAANR YILSFNANTV 360
  361 INLDGKDFVK CEVVGQSFML HQIRKMIGLA VAIMRNYAPE SLIEASFKKD VRINVPMAPE 420
  421 VGLYLDECFF TSYNKRFKGS HEEVSMEEYK EVAEEFKWKY VYSHIGSAEE KDGAVAIWLH 480
  481 SLNQRNYPDL RSNEYQPDEV IVYKKIGEAS EENIHEGNAE LFVVDKVNDE TSEGTTMEER 540
  541 TTLEEKATG

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..162] FFAS03 5.45 No description for 2nqpA was found.
    2 View Details [163..430] PSI-BLAST 70.045757 No description for 2nqpA was found.
    3 View Details [431..549] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.87

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle