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View Structure Prediction Details

Protein: DHE3_ARATH
Organism: Arabidopsis thaliana
Length: 411 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DHE3_ARATH.

Description E-value Query
Range
Subject
Range
DHE1_ARATH - Glutamate dehydrogenase 1 OS=Arabidopsis thaliana GN=GDH1 PE=2 SV=1
440.0 [0..1] [411..1]

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Predicted Domain #1
Region A:
Residues: [1-411]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNALAATNRN FKLASRLLGL DSKLEKSLLI PFREIKVECT IPKDDGTLAS FVGFRVQHDN  60
   61 ARGPMKGGIR YHPEVEPDEV NALAQLMTWK TAVAKIPYGG AKGGIGCDPS ELSLSELERL 120
  121 TRVFTQKIHD LIGIHTDVPA PDMGTGPQTM AWILDEYSKF HGHSPAVVTG KPIDLGGSLG 180
  181 RDAATGRGVL FATEALLNEH GKTISGQRFA IQGFGNVGSW AAKLISDKGG KIVAVSDVTG 240
  241 AIKNNNGIDI LSLLEHAEEN RGIKGFDGAD SIDPDSILVE DCDILVPAAL GGVINRENAN 300
  301 EIKAKFIIEG ANHPTDPEAD EILKKKGVMI LPDIYANSGG VTVSYFEWVQ NIQGFMWDEE 360
  361 KVNRELKTYM TRGFKDLKEM CQTHSCDLRM GAFTLGINRV AQATTIRGWG S

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 121.0
Match: 1b3bA
Description: Glutamate dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
glutamate dehydrogenase (NADP+) activity 4.50065200228697 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor 4.08697502437308 bayes_pls_golite062009
oxidoreductase activity 3.54983447672782 bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors 2.66605122152932 bayes_pls_golite062009
malate dehydrogenase activity 2.43636049081724 bayes_pls_golite062009
catalytic activity 2.0643953589843 bayes_pls_golite062009
binding 1.77370305872094 bayes_pls_golite062009
DNA binding 1.61355789916908 bayes_pls_golite062009
transcription regulator activity 1.55390653047158 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor 1.54527841865655 bayes_pls_golite062009
nucleic acid binding 1.48478425318425 bayes_pls_golite062009
malic enzyme activity 1.39067036188188 bayes_pls_golite062009
glutamate dehydrogenase [NAD(P)+] activity 0.994926158034199 bayes_pls_golite062009
transcription factor activity 0.91090893050278 bayes_pls_golite062009
structural molecule activity 0.345975336806588 bayes_pls_golite062009
NAD or NADH binding 0.0664389065992004 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle