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View Structure Prediction Details

Protein: CLCG_ARATH
Organism: Arabidopsis thaliana
Length: 763 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLCG_ARATH.

Description E-value Query
Range
Subject
Range
gi|21321022 - gi|21321022|dbj|BAB97267.1| chloride channel [Oryza sativa Japonica Group]
462.0 [0..3] [750..50]

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Predicted Domain #1
Region A:
Residues: [1-505]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNSTTEDSV AVPLLPSLRR ATNSTSQVAI VGANVCPIES LDYEIAENDF FKQDWRGRSK  60
   61 VEIFQYVFMK WLLCFCIGII VSLIGFANNL AVENLAGVKF VVTSNMMIAG RFAMGFVVFS 120
  121 VTNLILTLFA SVITAFVAPA AAGSGIPEVK AYLNGVDAPE IFSLRTLIIK IIGNISAVSA 180
  181 SLLIGKAGPM VHTGACVASI LGQGGSKRYR LTWRWLRFFK NDRDRRDLVT CGAAAGIAAS 240
  241 FRAPVGGVLF ALEEMSSWSA LLWRIFFSTA VVAIVLRALI DVCLSGKCGL FGKGGLIMFD 300
  301 VYSENASYHL GDVLPVLLLG VVGGILGSLY NFLLDKVLRA YNYIYEKGVT WKILLACAIS 360
  361 IFTSCLLFGL PFLASCQPCP VDALEECPTI GRSGNFKKYQ CPPGHYNDLA SLIFNTNDDA 420
  421 IKNLFSKNTD FEFHYFSVLV FFVTCFFLSI FSYGIVAPAG LFVPVIVTGA SYGRFVGMLL 480
  481 GSNSNLNHGL FAVLGAASFL GGTMR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.0
Match: 1kplA
Description: Clc chloride channel
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
anion channel activity 6.77290758049983 bayes_pls_golite062009
chloride channel activity 6.77290758049983 bayes_pls_golite062009
anion transmembrane transporter activity 6.08111514985329 bayes_pls_golite062009
voltage-gated chloride channel activity 5.99544422864122 bayes_pls_golite062009
voltage-gated anion channel activity 5.99544422864122 bayes_pls_golite062009
ion transmembrane transporter activity 5.07840957725271 bayes_pls_golite062009
ion channel activity 4.93164650815682 bayes_pls_golite062009
substrate-specific channel activity 4.81149777353187 bayes_pls_golite062009
channel activity 4.78965126968592 bayes_pls_golite062009
passive transmembrane transporter activity 4.78965126968592 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 4.67227438984104 bayes_pls_golite062009
voltage-gated ion channel activity 4.27956097534048 bayes_pls_golite062009
voltage-gated channel activity 4.255638017629 bayes_pls_golite062009
gated channel activity 4.1072949331811 bayes_pls_golite062009
transporter activity 2.94995161862691 bayes_pls_golite062009
transmembrane transporter activity 2.84443650880263 bayes_pls_golite062009
substrate-specific transporter activity 2.82470397063503 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [506-763]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSTCVILL ELTNNLLLLP MMMVVLLISK TVADGFNANI YNLIMKLKGF PYLYSHAEPY  60
   61 MRQLLVGDVV TGPLQVFNGI EKVETIVHVL KTTNHNGFPV VDGPPLAAAP VLHGLILRAH 120
  121 ILTLLKKRVF MPSPVACDSN TLSQFKAEEF AKKGSGRSDK IEDVELSEEE LNMYLDLHPF 180
  181 SNASPYTVVE TMSLAKALIL FREVGIRHLL VIPKTSNRPP VVGILTRHDF MPEHILGLHP 240
  241 SVSRSKWKRL RIRLPFFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.522879
Match: 2cu0A
Description: No description for 2cu0A was found.

YRC Informatics Platform - Version 3.0
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