| Protein: | CNG20_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 764 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNG20_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
398.0 | [0..2] | [763..126] |
|
Region A: Residues: [1-177] |
1 11 21 31 41 51
| | | | | |
1 MASHNENDDI PMLPISDPSS RTRARAFTSR SRSVSLSNPT SSIEGFDTST VVLGYTGPLR 60
61 TQRRPPLVQM SGPLTSTRKH EPLFLPHPSS DSVGVSSQPE RYPSFAALEH KNSSEDEFVL 120
121 KHANLLRSGQ LGMCNDPYCT TCPSYYNRKA AQIPTSRVSA LFDSTFHNAL YDDAKGW
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [178-319] |
1 11 21 31 41 51
| | | | | |
1 ARRFASSVNR YLPGIMNPHA KEVQTWTKFF ALSCLLAIFI DPLFFFLIKV QEQNKCIMID 60
61 WPMTKAFVAV RSVTDVIFTM NILLQFRLAY VARESTVVGA GQLVSHPKKI ALHYLKGKFF 120
121 LDLFIVMPLP QILILWIIPA HL
|
| Detection Method: | |
| Confidence: | 1.72 |
| Match: | 2a0lA |
| Description: | Crystal structure of KvAP-33H1 Fv complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [320-538] |
1 11 21 31 41 51
| | | | | |
1 GASGANYAKN LLRAAVLFQY IPKLYRLLPF LAGQTPTGFI FESAWANFVI NLLTFMLAGH 60
61 VVGSCWYLFG LQRVNQCLRN ACGNFGRECQ DLIDCGNGNS SVLVRATWKD NASANACFQE 120
121 DGFPYGIYLK AVNLTNHSNL FTRYSYSLFW GFQQISTLAG NQVPSYFLGE VFFTMGIIGL 180
181 GLLLFALLIG NMQNFLQALG KRNLEMTLRR RDVEQWMSH
|
| Detection Method: | |
| Confidence: | 10.154902 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [539-590] |
1 11 21 31 41 51
| | | | | |
1 RRLPDGIRRR VREAERFNWA ATRGVNEELL FENMPDDLQR DIRRHLFKFL KK
|
| Detection Method: | |
| Confidence: | 2.39 |
| Match: | 2ptmA |
| Description: | No description for 2ptmA was found. |
|
Region A: Residues: [591-764] |
1 11 21 31 41 51
| | | | | |
1 VRIFSLMDEP ILDAIRERLK QRTYIGSSTV LHRGGLVEKM VFIVRGEMES IGEDGSVLPL 60
61 YEGDVCGEEL LTWCLERSSV NPDGTRIRMP SKGLLSSRNV RCVTNVEAFS LSVADLEDVT 120
121 SLFSRFLRSH RVQGAIRYDS PYWRLRAARQ IQVAWRYRRR RLHRLCTPQS SYSL
|
| Detection Method: | |
| Confidence: | 12.69897 |
| Match: | 1wgpA |
| Description: | Solution structure of the cNMP-binding domain from Arabidopsis thaliana cyclic nucleotide-regulated ion channel |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cyclic nucleotide-gated ion channel activity | 9.28636958853471 | bayes_pls_golite062009 |
| intracellular cyclic nucleotide activated cation channel activity | 9.28636958853471 | bayes_pls_golite062009 |
| intracellular cGMP activated cation channel activity | 9.19973076787954 | bayes_pls_golite062009 |
| intracellular ligand-gated ion channel activity | 8.92326348606261 | bayes_pls_golite062009 |
| cGMP binding | 7.7575871125398 | bayes_pls_golite062009 |
| cyclic nucleotide binding | 7.37322432929433 | bayes_pls_golite062009 |
| GMP binding | 5.49455172024846 | bayes_pls_golite062009 |
| ligand-gated channel activity | 2.24160712920592 | bayes_pls_golite062009 |
| ligand-gated ion channel activity | 2.24160712920592 | bayes_pls_golite062009 |
| metal ion transmembrane transporter activity | 2.1641765932136 | bayes_pls_golite062009 |
| ion channel activity | 1.99113461395381 | bayes_pls_golite062009 |
| gated channel activity | 1.96880619620616 | bayes_pls_golite062009 |
| channel activity | 1.95481941885364 | bayes_pls_golite062009 |
| passive transmembrane transporter activity | 1.95481941885364 | bayes_pls_golite062009 |
| substrate-specific channel activity | 1.9532743483506 | bayes_pls_golite062009 |
| cation channel activity | 1.8875306855156 | bayes_pls_golite062009 |
| binding | 1.03706428234992 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.745476294699195 | bayes_pls_golite062009 |
| ion transmembrane transporter activity | 0.646885146396875 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.582561336941853 | bayes_pls_golite062009 |
| protein binding | 0.560659365968498 | bayes_pls_golite062009 |
| cation transmembrane transporter activity | 0.489669604147601 | bayes_pls_golite062009 |
| transporter activity | 0.232363663369302 | bayes_pls_golite062009 |
| transmembrane transporter activity | 0.209203009093296 | bayes_pls_golite062009 |
