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View Structure Prediction Details

Protein: AMPL1_ARATH
Organism: Arabidopsis thaliana
Length: 520 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMPL1_ARATH.

Description E-value Query
Range
Subject
Range
gi|31323179 - gi|31323179|gb|AAP43523.1| PepA [Escherichia coli B]
599.0 [0..18] [519..1]

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Predicted Domain #1
Region A:
Residues: [1-520]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHTLGLTQP NSTEPHKISF TAKEIDVIEW KGDILVVGVT EKDLAKDGNS KFENPILSKV  60
   61 DAHLSGLLAQ VSSEEDFTGK PGQSTVLRLP GLGSKRIALI GLGQSVSSPV AFHSLGEAVA 120
  121 TVSKASQSTS AAIVLASSVS DESKLSSVSA LASGIVLGLF EDGRYKSESK KPSLKAVDII 180
  181 GFGTGAEVEK KLKYAEDVSY GVIFGRELIN SPANVLTPAV LAEEAAKVAS TYSDVFTANI 240
  241 LNEEQCKELK MGSYLAVAAA SANPPHFIHL VYKPPNGSVK TKLALVGKGL TFDSGGYNIK 300
  301 TGPGCSIELM KFDMGGSAAV LGAAKAIGEI KPPGVEVHFI VAACENMISG TGMRPGDVIT 360
  361 ASNGKTIEVN NTDAEGRLTL ADALVYACNQ GVDKIVDLAT LTGACVIALG TSMAGIYTPS 420
  421 DELAKEVIAA SERSGEKLWR MPLEESYWEM MKSGVADMVN TGGRAGGSIT AALFLKQFVS 480
  481 EKVQWMHIDM AGPVWNEKKK SGTGFGVATL VEWVQKNSSS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 170.0
Match: 1gytA
Description: Leucine aminopeptidase, C-terminal domain; Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
peptidase activity 3.33046421415418 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.92029075689694 bayes_pls_golite062009
hydrolase activity 2.67636468634585 bayes_pls_golite062009
exopeptidase activity 1.92607656615233 bayes_pls_golite062009
catalytic activity 1.76936806579991 bayes_pls_golite062009
metallopeptidase activity 1.36622846208556 bayes_pls_golite062009
carboxypeptidase activity 1.26773013808101 bayes_pls_golite062009
metalloexopeptidase activity 0.675221914435689 bayes_pls_golite062009
transcription regulator activity 0.655590943576337 bayes_pls_golite062009
binding 0.512335905288743 bayes_pls_golite062009
metallocarboxypeptidase activity 0.406156022753981 bayes_pls_golite062009
nucleic acid binding 0.0365339945959349 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle