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View Structure Prediction Details

Protein: YEFA_BACSU, RLMC...
Organism: Bacillus subtilis
Length: 459 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YEFA_BACSU, RLMC....

Description E-value Query
Range
Subject
Range
gi|52784541, gi|... - gi|52784541|ref|YP_090370.1| YefA [Bacillus licheniformis ATCC 14580], gi|52347043|gb|AAU39677.1| Ye...
453.0 [0..1] [458..1]

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Predicted Domain #1
Region A:
Residues: [1-459]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMKPPVEKN EYYDVTFEDL THEGAGVAKV QGFPIFVPNA LPEEKAQIKV TRVKKGFAFG  60
   61 RLIELKEESP HRTDAPCPIY KQCGGCQLQH MTYEGQLLFK QKQVKDVLER IGKLDLSKVT 120
  121 VHPTLGMEDP WNYRNKAQVP VGEREGGLVA GFYQQRSHDI IDMSACLIQQ SKNDEAVQAV 180
  181 KDICANYGVK AYNEERHKGW LRHIMVRYGV VTGEMMIVFI TRTSDFPHKA KIIEDITAQF 240
  241 PHVKSIVQNI NPNKTNVIFG NETNVIWGEE YIYDLIGDVK FAISARSFYQ VNPEQTKVLY 300
  301 DKALEYAELQ GEETVIDAYC GIGTISLFLA KQAKKVYGVE IVPEAIEDAK RNAELNGNTN 360
  361 AEFAVGEAET VIPKWYEEGI TADTLVVDPP RKGCDEALLR TIVEMKPKRV VYVSCNPGTL 420
  421 ARDLRVLEDG GYVTREVQPV DMFPHTNHVE CCVLIKLKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.30103
Match: 1uwvA
Description: Crystal Structure of RumA, the iron-sulfur cluster containing E. coli 23S Ribosomal RNA 5-Methyluridine Methyltransferase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
methyltransferase activity 4.15445027778357 bayes_pls_golite062009
rRNA methyltransferase activity 4.09362182773099 bayes_pls_golite062009
N-methyltransferase activity 4.07806017452628 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 4.07153733729662 bayes_pls_golite062009
protein methyltransferase activity 3.92746815303714 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 3.39429041855776 bayes_pls_golite062009
RNA methyltransferase activity 3.07428840534971 bayes_pls_golite062009
histone methyltransferase activity 2.99461585647365 bayes_pls_golite062009
tRNA methyltransferase activity 2.5931020126592 bayes_pls_golite062009
arginine N-methyltransferase activity 2.41876112831625 bayes_pls_golite062009
protein-arginine N-methyltransferase activity 2.41876112831625 bayes_pls_golite062009
transferase activity 2.22303238506686 bayes_pls_golite062009
DNA-methyltransferase activity 2.18991764495147 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 2.04350689362549 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 2.04350689362549 bayes_pls_golite062009
histone-arginine N-methyltransferase activity 2.04296107639729 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 2.04218282227834 bayes_pls_golite062009
tRNA (cytosine)-methyltransferase activity 1.88889414729709 bayes_pls_golite062009
tRNA (cytosine-5-)-methyltransferase activity 1.88889414729709 bayes_pls_golite062009
rRNA (adenine) methyltransferase activity 1.83964463328968 bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity 1.75675289134467 bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity 1.66871163498737 bayes_pls_golite062009
tRNA (adenine-N1-)-methyltransferase activity 1.29759910099835 bayes_pls_golite062009
tRNA (adenine)-methyltransferase activity 1.29759910099835 bayes_pls_golite062009
catalytic activity 1.25333584501255 bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific) 1.1103522853299 bayes_pls_golite062009
rRNA (guanine) methyltransferase activity 1.10713374933008 bayes_pls_golite062009
ligase activity 1.06979791212194 bayes_pls_golite062009
single-stranded DNA binding 0.97496043954059 bayes_pls_golite062009
structural constituent of ribosome 0.943661008731946 bayes_pls_golite062009
transcription regulator activity 0.914549843668268 bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity 0.89325812193225 bayes_pls_golite062009
DNA binding 0.86027591375666 bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity 0.703178429468566 bayes_pls_golite062009
ribonuclease activity 0.702449673647117 bayes_pls_golite062009
nucleic acid binding 0.616949327277483 bayes_pls_golite062009
structural molecule activity 0.596857566298868 bayes_pls_golite062009
aspartate-tRNA ligase activity 0.504302440847948 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 0.449277083957511 bayes_pls_golite062009
RNA binding 0.417524996559564 bayes_pls_golite062009
exoribonuclease activity 0.40223812695012 bayes_pls_golite062009
binding 0.383237930789959 bayes_pls_golite062009
sequence-specific DNA binding 0.32084431704638 bayes_pls_golite062009
transcription factor activity 0.298729064067577 bayes_pls_golite062009
O-methyltransferase activity 0.250946859465502 bayes_pls_golite062009
rRNA (guanine-N1-)-methyltransferase activity 0.234572322347698 bayes_pls_golite062009
translation regulator activity 0.22908707234671 bayes_pls_golite062009
tRNA (guanine) methyltransferase activity 0.203168546434167 bayes_pls_golite062009
translation factor activity, nucleic acid binding 0.179682348023561 bayes_pls_golite062009
3'-5'-exoribonuclease activity 0.13299060447839 bayes_pls_golite062009

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