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View Structure Prediction Details

Protein: PBPF_BACSU
Organism: Bacillus subtilis
Length: 714 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PBPF_BACSU.

Description E-value Query
Range
Subject
Range
gi|52079498, gi|... - gi|52784863|ref|YP_090692.1| PbpF [Bacillus licheniformis ATCC 14580], gi|52347365|gb|AAU39999.1| Pb...
611.0 [0..6] [714..2]

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Predicted Domain #1
Region A:
Residues: [1-714]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKIKKKKLF IPIIILVLTA FLALIGYISI IFLGHYVIDE KKLILHASSK IVDQNGDEVA  60
   61 SLYTENREPV SINEIPKQVR EAFIAVEDKR FYEHHGIDAK SVGRAVYRDI LAGGKVEGGT 120
  121 TITQQLAKNI FLTHDKTFLR KTKEVIIAIN LERDYSKDKL LEMYLNQLYF GHGVYGIQAA 180
  181 SHYYFNKEVK DLTVSEGAVL AAIPKAPSTY SPILHPDKNK ERRDTILGMM NDQGYISAKE 240
  241 AVTAQGRTLG LHVKKQSETP WFDSYIDLVI KEAEDKYSIS GEQLLQGGYT IKVPLDSKLQ 300
  301 KTAYQVMKEG SYYPGTDQNA EGSAVFINNK TGGVEAAIGG RDYTSKGYNR VTAVRQPGST 360
  361 FKPLAVYGPA MQEKKFKPYS LLKDELQSYG DYTPKNYDSR YEGEVTMSDA ITYSKNAPAV 420
  421 WTLNEIGVET GKSYLKANGI DIPDEGLALA LGGLEKGVSP LQLAGAFHTF AANGTYTEPF 480
  481 FISSIIDEDG ETIADHKEEG KRVFSKQTSW NMTRMLQQVV KKGTATSGTY HGDLAGKTGS 540
  541 TSYTGVSGAT KDAWFAGYTP KITGAVWMGY DKTDQNHYLK AGSSYPTRLF KDILTQAGET 600
  601 GHVFTKPKNV KELESPIELK PVKTLTADYT FKAAGLFTIE LKWDAQEDDR AVYRIYVNKD 660
  661 GEETLLDSVE GKGSYEIPYA NLFSGASYKI VPYNTQTKRE GEGTDYVQPK LFSS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 115.0
Match: 2oluA
Description: No description for 2oluA was found.

Predicted functions:

Term Confidence Notes
serine-type D-Ala-D-Ala carboxypeptidase activity 3.37745387761459 bayes_pls_golite062009
penicillin binding 3.16077730467133 bayes_pls_golite062009
serine-type carboxypeptidase activity 3.02516915958448 bayes_pls_golite062009
serine-type exopeptidase activity 2.98959517344587 bayes_pls_golite062009
carboxypeptidase activity 2.34154596924818 bayes_pls_golite062009
catalytic activity 2.2253600206851 bayes_pls_golite062009
drug binding 2.00354593744547 bayes_pls_golite062009
exopeptidase activity 1.66768404710194 bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds 1.16054683174437 bayes_pls_golite062009
hydrolase activity, hydrolyzing O-glycosyl compounds 1.07226857049823 bayes_pls_golite062009
peptidase activity 0.0621279448114327 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle