YRC Public Data Repository - Protein Structure Prediction

Protein:	atp7
Organism:	Schizosaccharomyces pombe
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp7.

Description	E-value	Query Range	Subject Range
gi\|86196347, gi\|... - gi\|86196347\|gb\|EAQ70985.1\| hypothetical protein MGCH7_ch7g392 [Magnaporthe grisea 70-15], gi\|1492098...	231.0	[0..8]	[174..200]
gi\|114190764, gi... - gi\|115386450\|ref\|XP_001209766.1\| ATP synthase D chain, mitochondrial [Aspergillus terreus NIH2624], ...	231.0	[0..6]	[175..194]
gi\|83771781 - gi\|83771781\|dbj\|BAE61911.1\| unnamed protein product [Aspergillus oryzae] gi\|169777157 - gi\|169777157\|ref\|XP_001823044.1\| hypothetical protein [Aspergillus oryzae RIB40]	227.0	[0..3]	[175..1]
ATP7_KLULA - ATP synthase subunit d, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 707... ATP7_KLULA - ATP synthase subunit d, mitochondrial OS=Kluyveromyces lactis GN=ATP7 PE=3 SV=4	226.0	[0..1]	[175..1]
gi\|70984364, gi\|... - gi\|70984364\|ref\|XP_747696.1\| ATP synthase D chain, mitochondrial [Aspergillus fumigatus Af293], gi\|6... gi\|159122482 - gi\|159122482\|gb\|EDP47603.1\| ATP synthase D chain, mitochondrial, putative [Aspergillus fumigatus A11...	224.0	[0..6]	[166..14]
gi\|2425073 - gi\|2425073\|gb\|AAC64861.1\| F1Fo-ATP synthase subunit 7 [Kluyveromyces lactis]	224.0	[0..1]	[175..1]
gi\|67540922, gi\|... - gi\|67540922\|ref\|XP_664235.1\| hypothetical protein AN6631.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	223.0	[0..3]	[175..1]
ATP7_NEUCR - ATP synthase subunit d, mitochondrial OS=Neurospora crassa GN=atp-7 PE=3 SV=1 ATP7_NEUCR - ATP synthase subunit d, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708...	221.0	[0..3]	[175..1]
gi\|45185591, gi\|... - gi\|45185591\|ref\|NP_983307.1\| ACL097Cp [Ashbya gossypii ATCC 10895], gi\|44981309\|gb\|AAS51131.1\| ACL09... gi\|44981309 - gi\|44981309\|gb\|AAS51131.1\| ACL097Cp [Ashbya gossypii ATCC 10895]	219.0	[0..1]	[175..1]
ATP5H_MOUSE - ATP synthase subunit d, mitochondrial OS=Mus musculus GN=Atp5h PE=1 SV=3	218.0	[0..5]	[150..4]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKVASAAGK AIDWASVASK LKLDAATASA IANFRSRHAQ AVAKLGTLRE QATTVDFATY  60
   61 RSVLANKEIV NRIESSMKSF KPVKIDLNSQ LKAINAFEAK ASEGAKKNVE LVKAELQNLS 120
  121 ATLKNIEQAR PTEEITIEDM KQAVPEIEKI VETMVTKGKW VIPGYREKFG DLSIM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	52.09691
Match:	2clyB
Description:	No description for 2clyB was found.

Predicted functions:

Term	Confidence	Notes
hydrogen ion transmembrane transporter activity	10.7183160834782	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	8.97596713760839	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	7.90597892679083	bayes_pls_golite062009
hydrogen-exporting ATPase activity, phosphorylative mechanism	6.1125687610116	bayes_pls_golite062009
cation transmembrane transporter activity	4.22395118867988	bayes_pls_golite062009
ion transmembrane transporter activity	4.14778831333857	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.77987144158593	bayes_pls_golite062009
transporter activity	2.17343635031853	bayes_pls_golite062009
transmembrane transporter activity	2.0392528625188	bayes_pls_golite062009
substrate-specific transporter activity	1.96541207125766	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	1.93539847256373	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.72052571762598	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.46705756526037	bayes_pls_golite062009
pyrophosphatase activity	1.40154328896132	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.38474091052441	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.38237845949685	bayes_pls_golite062009
ATPase activity	1.3807805914732	bayes_pls_golite062009
primary active transmembrane transporter activity	0.799499441674651	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.793051451246261	bayes_pls_golite062009
active transmembrane transporter activity	0.769001631826172	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.763828049556794	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.760339273021048	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.760299009322944	bayes_pls_golite062009
catalytic activity	0.534516847146079	bayes_pls_golite062009
hydrolase activity	0.463638383758448	bayes_pls_golite062009
ATPase activity, coupled	0.334578049419841	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: