| Protein: | mec-3 |
| Organism: | Caenorhabditis elegans |
| Length: | 313 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mec-3.
| Description | E-value | Query Range |
Subject Range |
|
|
153.0 | [0..20] | [310..61] |
|
Region A: Residues: [1-194] |
1 11 21 31 41 51
| | | | | |
1 MPRLHDIWLL TGDLLQESSK ITASSKNSET IIYFQMDNRS YHENCVKCTI CESPLAEKCF 60
61 WKNGRIYCSQ HYYKDHSIHR CAGCKKGVSP TDMVYKLKAG LVFHVECHCC SLCGRHLSPG 120
121 EQILVDDTMM TVSCMSHYPP QMDDNAPGAI GSAVDIPSCS TENPIAPYPI DESFSSAFQV 180
181 KKEVDAYGYN FEHY
|
| Detection Method: |  |
| Confidence: | 17.69897 |
| Match: | 2dfyX |
| Description: | No description for 2dfyX was found. |
|
Region A: Residues: [195-313] |
1 11 21 31 41 51
| | | | | |
1 SFSDFCDDDS RMLKRRGPRT TIKQNQLDVL NEMFSNTPKP SKHARAKLAL ETGLSMRVIQ 60
61 VWFQNRRSKE RRLKHLCNYL RHYEQRGLIP PPIHFRNEEM DTTDFNAFCG NFEEEDDED
|
| Detection Method: | |
| Confidence: | 11.522879 |
| Match: | 2cueA |
| Description: | Solution structure of the homeobox domain of the human paired box protein Pax-6 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.13863038737912 | bayes_pls_golite062009 |
| DNA binding | 4.66369707598026 | bayes_pls_golite062009 |
| nucleic acid binding | 4.51452285155271 | bayes_pls_golite062009 |
| transcription factor activity | 4.06706589695599 | bayes_pls_golite062009 |
| binding | 3.02779747447702 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.41271657675151 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.26183812259792 | bayes_pls_golite062009 |
| transcription repressor activity | 1.91962622287073 | bayes_pls_golite062009 |
| transcription activator activity | 1.77700860354597 | bayes_pls_golite062009 |
| transcription factor binding | 1.40653841901929 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.14886080629275 | bayes_pls_golite062009 |
| chromatin binding | 1.04132983826241 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.84983974758882 | bayes_pls_golite062009 |
| protein binding | 0.830419844171551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.25931464844298 | bayes_pls_golite062009 |
