| Protein: | lig-4 |
| Organism: | Caenorhabditis elegans |
| Length: | 741 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lig-4.
| Description | E-value | Query Range |
Subject Range |
|
|
458.0 | [0..1] | [738..10] |
|
Region A: Residues: [1-634] |
1 11 21 31 41 51
| | | | | |
1 MASDVIFDEV VDVFNKIRRT SNVKSKQATF QKNFESWKEK CSDPSDMFVI IRFFVSDYER 60
61 FRKFDMGPTK LASFMAKTFH DVRADYVSTI SKDASTAARQ LAEKISEEYR TENDESTVVT 120
121 VSELNEILDF LAAGPMDDGN KRDKMSKLVK RCSEDELEWI FNVILKNVES ALGAPSNRIL 180
181 DWISPSACAI WDQTHDLKAV LKGKLVENKG TNELGETNDD DDEHLFKIWT PMLLQKQKRG 240
241 DWYANIEKFG GQKFFLQTKF DGENVLLHKK GNEYRWFTRN NNDFSKEYGD SSMAIGKLSS 300
301 RIHSFFNKEC ESAIFNCELM LWDKKTKKLC RHNDASTTSD AQVLSFRHVK PDDNQQLTVV 360
361 LFDLLYLNGK PFFGAPLHQR LEMLKIAPLK KEREDTIFVA KHEEGSKKED IQQFFEIAMA 420
421 NNEEGIVVKR TDSVYVKGQR SASNGWFKLK PSASKDCDLD LALVAVHPGA GRNGKTLYRF 480
481 AAFDEKTQDY KLCLSCSYGL SDTVREAIRF EYGQLLEEAP EELTFYGKRP KNIARGDGGY 540
541 IDFERWQVIK ITSNGVRNGK LVDPVMREWR LDKPVEQVNT WEEFSDYATK VQECKLGDNV 600
601 DSDEEDSEDK KPDTLKVERI TRKAIHQSAP VRLK
|
| Detection Method: |  |
| Confidence: | 109.0 |
| Match: | 1x9nA |
| Description: | Crystal Structure of Human DNA Ligase I bound to 5'-adenylated, nicked DNA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA ligase activity | 10.0279903057926 | bayes_pls_golite062009 |
| ligase activity, forming phosphoric ester bonds | 9.92846900587219 | bayes_pls_golite062009 |
| DNA ligase (ATP) activity | 8.51283882444113 | bayes_pls_golite062009 |
| DNA ligase (NAD+) activity | 3.17397926295565 | bayes_pls_golite062009 |
| ligase activity | 2.36807839237461 | bayes_pls_golite062009 |
| catalytic activity | 2.15370807854636 | bayes_pls_golite062009 |
| binding | 1.82998145778732 | bayes_pls_golite062009 |
| protein binding | 1.38006517521813 | bayes_pls_golite062009 |
| nucleic acid binding | 1.06318697852063 | bayes_pls_golite062009 |
| DNA binding | 0.920391596538289 | bayes_pls_golite062009 |
|
Region A: Residues: [635-741] |
1 11 21 31 41 51
| | | | | |
1 RAKLESSLTG IEVAVLQGTS ETIRRKCEEI LKHFDATVVK GITPSTKLCI ATAPKSTHPK 60
61 TAQAIASNSC TVLKPAWLER CNKDDLIQAW LPSDVFHAIE GGFEIQE
|
| Detection Method: | |
| Confidence: | 20.154902 |
| Match: | 2e2wA |
| Description: | No description for 2e2wA was found. |
