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View Structure Prediction Details

Protein: CE32815
Organism: Caenorhabditis elegans
Length: 504 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE32815.

Description E-value Query
Range
Subject
Range
gi|157746183 - gi|157746183|ref|XP_001668188.1| Hypothetical protein CBG04059 [Caenorhabditis briggsae AF16]
gi|39595413, gi|... - gi|39595413|emb|CAE60451.1| Hypothetical protein CBG04059 [Caenorhabditis briggsae], gi|187036245|em...
384.0 [0..1] [504..1]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTVQAISGL VTSRFFGTST RIMASGKTLN TSNINPNVIK MEYAVRGPIV IRAVELEKEL  60
   61 ATGAQKPFPN VIKANIG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.154902
Match: 2ra5A
Description: No description for 2ra5A was found.

Predicted Domain #2
Region A:
Residues: [78-504]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAHAMGQKPI TFIRQLLACI VNPEIMKTDK SIPSDVIEHA NAFLGSCGGK SAGAYSQSTG  60
   61 VEIVRKHVAE YIKRRDGGIP CNSEDVCLSG GASESIRNVL KLFINHNNAK KVGVMIPIPQ 120
  121 YPLYSATIEE FGLGQVGYYL SESSNWSMDE AELERSFNDH CKEYDIRVLC IINPGNPTGQ 180
  181 ALSRENIETI IKFAQKKNLF LMADEVYQDN VYAQGSQFHS FKKVLVEMGE PYNKMELASF 240
  241 HSVSKGYMGE CGMRGGYVEF LNLDPEVYVL FKKMISAKLC STVLGQAVID AVVNPPKEGD 300
  301 ASYALWKQEK DAVLASLKER ATLVEKAYSS IDGISCNPVQ GAMYAFPQIT IPQRAVEKAQ 360
  361 SLNQQPDFFY AMQLLETTGI CIVPGSGFGQ KDGTYHFRTT ILPQPELFKD MLSRFTDFHQ 420
  421 KFLAEYK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 78.221849
Match: 1xi9A
Description: Alanine aminotransferase from Pyrococcus furiosus Pfu-1397077-001
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
L-aspartate:2-oxoglutarate aminotransferase activity 5.51961002550688 bayes_pls_golite062009
catalytic activity 2.29878871754893 bayes_pls_golite062009
4-aminobutyrate transaminase activity 1.82501790383768 bayes_pls_golite062009
glycine dehydrogenase (decarboxylating) activity 1.63055151623667 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor 1.63055151623667 bayes_pls_golite062009
transferase activity 1.44093490824786 bayes_pls_golite062009
transferase activity, transferring nitrogenous groups 1.28316822767388 bayes_pls_golite062009
transaminase activity 1.24990480711889 bayes_pls_golite062009
L-alanine:2-oxoglutarate aminotransferase activity 1.06988190956423 bayes_pls_golite062009
alanine-oxo-acid transaminase activity 1.06988190956423 bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances 0.942545094747784 bayes_pls_golite062009
hydrolase activity, acting on acid carbon-carbon bonds 0.845816961387768 bayes_pls_golite062009
N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity 0.753443687983955 bayes_pls_golite062009
binding 0.536634592992536 bayes_pls_golite062009
transferase activity, transferring acyl groups 0.319452731970428 bayes_pls_golite062009
pyridoxal phosphate binding 0.16957228630576 bayes_pls_golite062009
vitamin B6 binding 0.16957228630576 bayes_pls_golite062009
aromatic-amino-acid:2-oxoglutarate aminotransferase activity 0.0916183433120769 bayes_pls_golite062009
kynureninase activity 0.0900983660305177 bayes_pls_golite062009
cystathionine beta-lyase activity 0.0833010353195099 bayes_pls_golite062009
nucleic acid binding 0.013097682076602 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle