| Protein: | ceh-18 |
| Organism: | Caenorhabditis elegans |
| Length: | 540 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
|
Region A: Residues: [1-72] |
1 11 21 31 41 51
| | | | | |
1 MNTLENTFQF LAEVFEANGG CLVTERVSPS LSGASKRKSR PVKRIITEDE VIPEEEVVEE 60
61 EEEEKVEQPS EE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [73-187] |
1 11 21 31 41 51
| | | | | |
1 VTCPAMQVDA TDAILASLRQ IANNDLSEHC IREDEGNTSA EVFSNGNGED MEQAGLAGTD 60
61 LLRRVADMLQ GNHNGSLNSH FLQQQFAAFK VDPTPVSTNG NGLLTPITTQ LSPLF
|
| Detection Method: | |
| Confidence: | 12.522879 |
| Match: | 1wh6A |
| Description: | Solution structure of the second CUT domain of human Homeobox protein Cux-2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 5.51228466689923 | bayes_pls_golite062009 |
| nucleic acid binding | 5.37468811865033 | bayes_pls_golite062009 |
| transcription regulator activity | 5.05236457497789 | bayes_pls_golite062009 |
| transcription factor activity | 3.89464979825638 | bayes_pls_golite062009 |
| binding | 3.66501723413351 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.25218945600666 | bayes_pls_golite062009 |
| transcription activator activity | 3.15886611325686 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.32042014361691 | bayes_pls_golite062009 |
| transcription repressor activity | 1.75958281319075 | bayes_pls_golite062009 |
| protein binding | 1.55649304400241 | bayes_pls_golite062009 |
| transcription factor binding | 1.02788976342343 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.8718993114781 | bayes_pls_golite062009 |
| chromatin binding | 0.62573870961765 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.34211447646243 | bayes_pls_golite062009 |
| catalytic activity | 0.00446472034106909 | bayes_pls_golite062009 |
|
Region A: Residues: [188-284] |
1 11 21 31 41 51
| | | | | |
1 TSTDAFNSPE KLLQAIMTPS LGFLGANGLG ASNSGLLSSP LIAPSPTLLQ SLMNTPTQPT 60
61 ASLTPKKAEN RPPVVSQTLK ASKRRLFDDT SRIEAAS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [285-540] |
1 11 21 31 41 51
| | | | | |
1 MSGDDRIDMN ELEAFAQTFK KQRIKFGFTQ GDVGVALGKR YGTDFSQTTI SRFEALNLSF 60
61 KNMCKLRPLL KEWLADVEMA IEGGATVTDL IDKKTIHNGN HHTIHHVDIH ETSISNSISS 120
121 VTASSLLSRE QHVKRRRKRT NLDMNQRNAL DTFFALNPRP DHDKMTDIAN SLELDRDVVR 180
181 VWFCNRRQKM RRVDEPIEGE MVTPSVSPVF PHFSSMSALE QIQEAARLAS CQASNDDSDG 240
241 TSGSPDAPSN DGCSDL
|
| Detection Method: | |
| Confidence: | 21.0 |
| Match: | 1o4xA |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 5.51228466689923 | bayes_pls_golite062009 |
| nucleic acid binding | 5.37468811865033 | bayes_pls_golite062009 |
| transcription regulator activity | 5.05236457497789 | bayes_pls_golite062009 |
| transcription factor activity | 3.89464979825638 | bayes_pls_golite062009 |
| binding | 3.66501723413351 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.25218945600666 | bayes_pls_golite062009 |
| transcription activator activity | 3.15886611325686 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.32042014361691 | bayes_pls_golite062009 |
| transcription repressor activity | 1.75958281319075 | bayes_pls_golite062009 |
| protein binding | 1.55649304400241 | bayes_pls_golite062009 |
| transcription factor binding | 1.02788976342343 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.8718993114781 | bayes_pls_golite062009 |
| chromatin binding | 0.62573870961765 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.34211447646243 | bayes_pls_golite062009 |
| catalytic activity | 0.00446472034106909 | bayes_pls_golite062009 |
