| Protein: | cfi-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 467 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cfi-1.
| Description | E-value | Query Range |
Subject Range |
|
|
254.0 | [0..115] | [412..10] |
|
Region A: Residues: [1-160] |
1 11 21 31 41 51
| | | | | |
1 MSVRIDEPQL FVSMSKEPTQ ETVNVGGHHD DSSSNCDERV DDQTEEQKSP PASPDLTANL 60
61 NVFDLESRQK VVQRLLNSQL NLSNLRAPLN LPPIFQALQG PFSIQQQLLG LASGLTAISP 120
121 GLDDYDEENT NQGEPEDLTL GGFRKETSVK SEEPSESGIN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [161-290] |
1 11 21 31 41 51
| | | | | |
1 ASGPAWSYEE QFKQLYELSD DVKRKEWLDD WLNFMHRIGK PVTRIPIMAK QVLDLYELYR 60
61 LVVQHGGLVE IINKKLWREI TKGLNLPSSI TSAAFTLRTQ YQKYLYDYEC EKEKLSNQSD 120
121 LQQAIDGNRR
|
| Detection Method: | |
| Confidence: | 36.09691 |
| Match: | 1c20A |
| Description: | DNA-binding domain from the dead ringer protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.19578385565784 | bayes_pls_golite062009 |
| DNA binding | 0.71807968216163 | bayes_pls_golite062009 |
| transcription regulator activity | 0.57049928754391 | bayes_pls_golite062009 |
| nucleic acid binding | 0.121561704601947 | bayes_pls_golite062009 |
| protein binding | 0.0208719739174101 | bayes_pls_golite062009 |
|
Region A: Residues: [291-402] |
1 11 21 31 41 51
| | | | | |
1 EAPGRRTAPS FPLPFQLPHA ASAAATMLNN QLNGLGMRND LLDDENTLSL QASGLFGTSY 60
61 GAEQMAILEA HQRNLERAQR AVQQQVARQS LGLTACSNGN GGNIHNSGRE ST
|
| Detection Method: | |
| Confidence: | 1.02 |
| Match: | 1s1i9 |
| Description: | Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [403-467] |
1 11 21 31 41 51
| | | | | |
1 SSNDSDIPAK RPKLENDVKT NGASSMRIST KHSDNSKTSM SVSMEINGIT YQGVLFALDE 60
61 TVSES
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
