YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: cfi-1

General Information:
Name(s) found: cfi-1 / CE31068 [WormBase]
Description(s) found:
Found 22 descriptions.
SHOW ALL
  • WBGene00000476 locus:cfi-1 AT-rich interactive domain-containing protein cfi-1 status:Confirmed UniProt:O02326 protein_id:CAB03395.3 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 467 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    intracellular [IEALink to PubMed article]
    Biological Process: neuron differentiation [IMPLink to PubMed article]
    cell fate commitment [IMPLink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article][ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVRIDEPQL FVSMSKEPTQ ETVNVGGHHD DSSSNCDERV DDQTEEQKSP PASPDLTANL  60
   61 NVFDLESRQK VVQRLLNSQL NLSNLRAPLN LPPIFQALQG PFSIQQQLLG LASGLTAISP 120
  121 GLDDYDEENT NQGEPEDLTL GGFRKETSVK SEEPSESGIN ASGPAWSYEE QFKQLYELSD 180
  181 DVKRKEWLDD WLNFMHRIGK PVTRIPIMAK QVLDLYELYR LVVQHGGLVE IINKKLWREI 240
  241 TKGLNLPSSI TSAAFTLRTQ YQKYLYDYEC EKEKLSNQSD LQQAIDGNRR EAPGRRTAPS 300
  301 FPLPFQLPHA ASAAATMLNN QLNGLGMRND LLDDENTLSL QASGLFGTSY GAEQMAILEA 360
  361 HQRNLERAQR AVQQQVARQS LGLTACSNGN GGNIHNSGRE STSSNDSDIP AKRPKLENDV 420
  421 KTNGASSMRI STKHSDNSKT SMSVSMEING ITYQGVLFAL DETVSES

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..160] deduced N/A No confident structure predictions are available.
    2 View Details [161..290] PSI-BLAST 36.09691 DNA-binding domain from the dead ringer protein
    3 View Details [291..402] FFAS03 1.02 Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
    4 View Details [403..467] MSA 2.103995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.19578385565784 bayes_pls_golite062009
  • DNA binding
    		•  0.71807968216163 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.57049928754391 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.121561704601947 bayes_pls_golite062009
  • protein binding
    		•  0.0208719739174101 bayes_pls_golite062009
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle