| Protein: | nhr-104 |
| Organism: | Caenorhabditis elegans |
| Length: | 242 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-104.
| Description | E-value | Query Range |
Subject Range |
|
|
197.0 | [0..1] | [242..203] |
|
Region A: Residues: [1-95] |
1 11 21 31 41 51
| | | | | |
1 MRFNPCDVCL SPGNGKHFGV DACRGCTAFF RRTIVNKRNY SCSEDDTCEI EKSEGLLCKK 60
61 CRFEKCLKVG MKKESIQKHR DIYGRRNPEN RALII
|
| Detection Method: |  |
| Confidence: | 20.09691 |
| Match: | 1lo1A |
| Description: | Steroid hormone receptor Err2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.00967542385368 | bayes_pls_golite062009 |
| DNA binding | 3.60745514727532 | bayes_pls_golite062009 |
| nucleic acid binding | 3.47256374293954 | bayes_pls_golite062009 |
| binding | 2.96409924710655 | bayes_pls_golite062009 |
| transcription activator activity | 2.9532663930699 | bayes_pls_golite062009 |
| transcription factor activity | 2.90769972671972 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 2.72967350701574 | bayes_pls_golite062009 |
| protein binding | 2.44501340584871 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.40923942043513 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.49515149729803 | bayes_pls_golite062009 |
| transcription factor binding | 1.38523780690867 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 1.26452462867497 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 0.68943696300126 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.58115018700114 | bayes_pls_golite062009 |
| transcription repressor activity | 0.256420113528322 | bayes_pls_golite062009 |
| catalytic activity | 0.101795606736461 | bayes_pls_golite062009 |
|
Region A: Residues: [96-242] |
1 11 21 31 41 51
| | | | | |
1 SPSTSQLQVT IPITLLSSVK RNYAELENVR EIVHRMDGFS MFLKPAPRGQ TYKETYRLLL 60
61 REFYLVSDWV SNCFPLFKEL PNSQKDILLR NFYLTFYNLE AGFFACQHNK IDVWFLPNGN 120
121 FIDCQNLEAF YYDPHNQQPM TSADAAR
|
| Detection Method: | |
| Confidence: | 19.221849 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
