Protein: | uaf-1 |
Organism: | Caenorhabditis elegans |
Length: | 471 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for uaf-1.
Description | E-value | Query Range |
Subject Range |
|
282.0 | [0..87] | [469..20] |
Region A: Residues: [1-152] |
1 11 21 31 41 51 | | | | | | 1 MSDHQDGMKL EDIERQFLDV AQREGGLEAI QPTTGPLENE ENLKSSTGGG GGEDDNDRKK 60 61 RKRSRSRDRD TRRRSRSRDR GERRGGGGGG DDEARSRREP EPQKPREPKK YRFWDVPPTG 120 121 FETTTPMEYK NMQAAGQVPR GSVQSAVPVV GP |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [153-263] |
1 11 21 31 41 51 | | | | | | 1 SVTCQSRRLY VGNIPFGCNE EAMLDFFNQQ MHLCGLAQAP GNPILLCQIN LDKNFAFIEF 60 61 RSIDETTAGM AFDGINFMGQ QLKVRRPRDY QPSQNTFDMN SRMPVSTIVV D |
Detection Method: | |
Confidence: | 30.522879 |
Match: | 2g4bA |
Description: | No description for 2g4bA was found. |
Region A: Residues: [264-364] |
1 11 21 31 41 51 | | | | | | 1 SANKIFIGGL PNYLTEDQVK ELLCSFGPLK AFSLNVDSQG NSKGYAFAEY LDPTLTDQAI 60 61 AGLNGMQLGD KQLVVQLACA NQQRHNTNLP NSASAIAGID L |
Detection Method: | |
Confidence: | 15.69897 |
Match: | 2u2fA |
Description: | Splicing factor U2AF 65 KDa subunit |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
6.62953239642182 | bayes_pls_golite062009 | |
mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
binding | 3.64400841800969 | bayes_pls_golite062009 |
poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
protein binding | 1.12215421354121 | bayes_pls_golite062009 |
mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 0.425042944899091 | bayes_pls_golite062009 |
transporter activity | 0.417047632648771 | bayes_pls_golite062009 |
sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
cytoskeletal protein binding | 0.288834004308736 | bayes_pls_golite062009 |
transmembrane transporter activity | 0.288804044686487 | bayes_pls_golite062009 |
snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
nucleoside-triphosphatase activity | 0.00171911393626201 | bayes_pls_golite062009 |
Region A: Residues: [365-471] |
1 11 21 31 41 51 | | | | | | 1 SQGAGRATEI LCLMNMVTED ELKADDEYEE ILEDVRDECS KYGIVRSLEI PRPYEDHPVP 60 61 GVGKVFVEFA STSDCQRAQA ALTGRKFANR TVVTSYYDVD KYHNRQF |
Detection Method: | |
Confidence: | 12.09691 |
Match: | 1o0pA |
Description: | Splicing factor U2AF 65 KDa subunit |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
6.62953239642182 | bayes_pls_golite062009 | |
mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
binding | 3.64400841800969 | bayes_pls_golite062009 |
poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
transcription regulator activity | 1.92450390013691 | bayes_pls_golite062009 |
DNA binding | 1.8021593476478 | bayes_pls_golite062009 |
structural molecule activity | 1.29928829870122 | bayes_pls_golite062009 |
transcription factor activity | 1.15127506309683 | bayes_pls_golite062009 |
protein binding | 1.12215421354121 | bayes_pls_golite062009 |
mRNA 3'-UTR binding | 0.591700155096213 | bayes_pls_golite062009 |
general RNA polymerase II transcription factor activity | 0.425042944899091 | bayes_pls_golite062009 |
transporter activity | 0.417047632648771 | bayes_pls_golite062009 |
sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
cytoskeletal protein binding | 0.288834004308736 | bayes_pls_golite062009 |
transmembrane transporter activity | 0.288804044686487 | bayes_pls_golite062009 |
snoRNA binding | 0.0568636182001701 | bayes_pls_golite062009 |
nucleoside-triphosphatase activity | 0.00171911393626201 | bayes_pls_golite062009 |