| Protein: | exos-4.2 |
| Organism: | Caenorhabditis elegans |
| Length: | 241 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for exos-4.2.
| Description | E-value | Query Range |
Subject Range |
|
|
248.0 | [0..2] | [239..298] |
|
Region A: Residues: [1-241] |
1 11 21 31 41 51
| | | | | |
1 MPTTRSNLSI PLTHLARIDD DRMETDSEEH KRANTAFRPL CVKCGVFGAQ DGSGYAEFGN 60
61 TRVLAQITGP DGDGKWEEDR AKITIELKGI EDSVKVAEYR AQLASAVSAV IFASKYPGKV 120
121 IEIEITVLSD DGGVLSTALS AVTLAISHSG IENMGLMASV HVAMNSDGEC LTDPSTSESE 180
181 GAIGGVTFAF VPNLGQTTCV DIYGRIPLKS TSSLLEFAKQ RACALVPTIH KAIVNSVRER 240
241 K
|
| Detection Method: |  |
| Confidence: | 55.045757 |
| Match: | 2ba0F |
| Description: | Archaeal exosome core |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 3'-5'-exoribonuclease activity | 2.16830676862423 | bayes_pls_golite062009 |
| exoribonuclease activity, producing 5'-phosphomonoesters | 1.94887328847363 | bayes_pls_golite062009 |
| structural constituent of ribosome | 1.90115575554186 | bayes_pls_golite062009 |
| exoribonuclease activity | 1.90081280972069 | bayes_pls_golite062009 |
| structural molecule activity | 1.69321127364043 | bayes_pls_golite062009 |
| RNA binding | 1.36549953164096 | bayes_pls_golite062009 |
| ribonuclease activity | 1.31550811238109 | bayes_pls_golite062009 |
| transcription regulator activity | 1.20748032530392 | bayes_pls_golite062009 |
| nucleic acid binding | 1.05662964529454 | bayes_pls_golite062009 |
| binding | 0.907487229190259 | bayes_pls_golite062009 |
| catalytic activity | 0.878454819018611 | bayes_pls_golite062009 |
| DNA binding | 0.828609700556836 | bayes_pls_golite062009 |
| nuclease activity | 0.69721312877891 | bayes_pls_golite062009 |
| 3'-5' exonuclease activity | 0.477960254167 | bayes_pls_golite062009 |
| tRNA-specific ribonuclease activity | 0.383567539949931 | bayes_pls_golite062009 |
| mRNA binding | 0.17546516359584 | bayes_pls_golite062009 |
