| Protein: | ceh-6 |
| Organism: | Caenorhabditis elegans |
| Length: | 380 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ceh-6.
| Description | E-value | Query Range |
Subject Range |
|
|
139.0 | [0..2] | [340..22] |
|
Region A: Residues: [1-157] |
1 11 21 31 41 51
| | | | | |
1 MLIPSSSSIP SSLSASASDS EPSSLNGSGI SDQNILPNYH LHHHLINENE MEAANYAQVI 60
61 KPTCEAFQDW PHTPMLYQQP QLHFMLPQHD WAYPHLAQSL PPPHHLTPST AAVAAATIAS 120
121 QSSIINQTSV VTSTPSCQIK QEVERPEIIQ RLMPPWP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [158-380] |
1 11 21 31 41 51
| | | | | |
1 PAYQFSCDDS GSVSGAGGPH QPLSDISDDS EQTCPDDLEG FAKQFKQRRI KLGYTQADVG 60
61 VALGTLYGNI FSQTTICRFE ALQLSFKNMC KLKPLLFKWL EEADSTTGSP NSTFEKMTGQ 120
121 AGRKRKKRTS IEVNVKSRLE FHFQSNQKPN AQEITQVAME LQLEKEVVRV WFCNRRQKEK 180
181 RIAPNQYDAP HPMALNNGYP MTADLFPYQA VVNHYTQQSP RQQ
|
| Detection Method: | |
| Confidence: | 28.0 |
| Match: | 1o4xA |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 5.51228466689923 | bayes_pls_golite062009 |
| nucleic acid binding | 5.37468811865033 | bayes_pls_golite062009 |
| transcription regulator activity | 5.05236457497789 | bayes_pls_golite062009 |
| transcription factor activity | 3.89464979825638 | bayes_pls_golite062009 |
| binding | 3.66501723413351 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.25218945600666 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.22754992035091 | bayes_pls_golite062009 |
| transcription activator activity | 3.15886611325686 | bayes_pls_golite062009 |
| transcription repressor activity | 1.75958281319075 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.62096064323298 | bayes_pls_golite062009 |
| protein binding | 1.55649304400241 | bayes_pls_golite062009 |
| chromatin binding | 1.2739759748489 | bayes_pls_golite062009 |
| transcription factor binding | 1.02788976342343 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.92393807212912 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.8718993114781 | bayes_pls_golite062009 |
| transcription coactivator activity | 0.81316180547536 | bayes_pls_golite062009 |
| promoter binding | 0.22765608166458 | bayes_pls_golite062009 |
| catalytic activity | 0.00446472034106909 | bayes_pls_golite062009 |
