| Protein: | CE27708 |
| Organism: | Caenorhabditis elegans |
| Length: | 408 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE27708.
| Description | E-value | Query Range |
Subject Range |
|
|
306.0 | [0..4] | [405..59] |
|
Region A: Residues: [1-214] |
1 11 21 31 41 51
| | | | | |
1 MSFFNPPANS NHGYNDDVNT GYNARMHSKL AEREGFHLGN GSDEPRTLYV GNLDSTVTED 60
61 FIATLFNQIG SVTKTKVIFD GSNDPYAFVE FSDHGQASQA LQTMNKRLLL DREMKVNWAV 120
121 EPGQQQSKID TTRHFHVFVG DLSSEVDNQK LREAFQPFGD VSDAKVIRDT NTTKSKGYGF 180
181 VSYPKREEAE RAIEQMNGQW LGRRTIRTNW ATRK
|
| Detection Method: |  |
| Confidence: | 46.154902 |
| Match: | 1ha1A |
| Description: | HNRNP A1 (RBD1,2) FROM HOMO SAPIENS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.73097473547076 | bayes_pls_golite062009 |
| 6.62953239642182 | bayes_pls_golite062009 | |
| mRNA binding | 5.29759606920196 | bayes_pls_golite062009 |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| snRNA binding | 4.06596327298973 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 3.11990160533699 | bayes_pls_golite062009 |
| U1 snRNA binding | 3.02511982045347 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.93798024346416 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| structural molecule activity | 1.56454315220334 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.34078165372485 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.824614388276642 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
|
Region A: Residues: [215-311] |
1 11 21 31 41 51
| | | | | |
1 PGDQEKPSHY NEKSYDEIYN QTSGDNTSVY VGNIASLTED EIRQGFASFG RITEVRIFKM 60
61 QGYAFVKFDN KDAAAKAIVQ MNNQDVGGQL VRCSWGK
|
| Detection Method: | |
| Confidence: | 3.88 |
| Match: | 1x4gA |
| Description: | Solution structure of RRM domain in Nucleolysin TIAR |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| 6.40066880991253 | bayes_pls_golite062009 | |
| RNA binding | 6.32219487559982 | bayes_pls_golite062009 |
| mRNA binding | 4.87640532914983 | bayes_pls_golite062009 |
| nucleic acid binding | 4.65259034341669 | bayes_pls_golite062009 |
| snRNA binding | 3.77997752511163 | bayes_pls_golite062009 |
| binding | 3.48033873254013 | bayes_pls_golite062009 |
| U1 snRNA binding | 2.73908382552928 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 2.7133834347239 | bayes_pls_golite062009 |
| single-stranded RNA binding | 2.55628738360472 | bayes_pls_golite062009 |
| transcription regulator activity | 2.2045206027152 | bayes_pls_golite062009 |
| DNA binding | 1.99030664201171 | bayes_pls_golite062009 |
| structural molecule activity | 1.57342338925793 | bayes_pls_golite062009 |
| transcription factor activity | 1.09958329302628 | bayes_pls_golite062009 |
| U2 snRNA binding | 1.09350203162237 | bayes_pls_golite062009 |
| protein binding | 1.05805521997665 | bayes_pls_golite062009 |
| mRNA 3'-UTR binding | 0.462558743683805 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.327072171076297 | bayes_pls_golite062009 |
|
Region A: Residues: [312-408] |
1 11 21 31 41 51
| | | | | |
1 TGDTGKTPGG SYGYGYGNSS SGGNSQPYSG YGGGGAYGGG QGGGGHGGPG QQQSNANSQY 60
61 WQYYAQYYNN PQLMQQWSNY WQQQGGAPQQ QNSGGHQ
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
