| Protein: | pop-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 437 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pop-1.
| Description | E-value | Query Range |
Subject Range |
|
|
251.0 | [0..1] | [437..2] |
|
Region A: Residues: [1-179] |
1 11 21 31 41 51
| | | | | |
1 MADEELGDEV KVFRRDEDAD DDPMISGETS EQQLADDKKE AVMEAELDGA GRNPSIDVLK 60
61 SAFPKVEPMS PSFPGLMSHF SPGYSAAALP MFMPLFMNPY AAALRSPSLM FPMGAMSPTF 120
121 PMFPPSPVYG AAIAAAAAKQ HFENMAPLNM RAGHPMNQMG MPPYMHPSSM APQNVDRRA
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [180-279] |
1 11 21 31 41 51
| | | | | |
1 QGGGKAKKDD HVKKPLNAFM WFMKENRKAL LEEIGNNEKQ SAELNKELGK RWHDLSKEEQ 60
61 AKYFEMAKKD KETHKERYPE WSARENYAVN KKKTKKRRDK
|
| Detection Method: | |
| Confidence: | 20.69897 |
| Match: | 2gzkA |
| Description: | No description for 2gzkA was found. |
| Term | Confidence | Notes |
| binding | 2.28152434895694 | bayes_pls_golite062009 |
| DNA binding | 1.84781463420276 | bayes_pls_golite062009 |
| nucleic acid binding | 1.65696822227413 | bayes_pls_golite062009 |
| transcription regulator activity | 1.61604561096523 | bayes_pls_golite062009 |
| transcription factor activity | 0.79924481726919 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.61748685686195 | bayes_pls_golite062009 |
| protein binding | 0.413179898438205 | bayes_pls_golite062009 |
|
Region A: Residues: [280-437] |
1 11 21 31 41 51
| | | | | |
1 SIPSENNDQK KCRARFGVNN TEMWCKFCKR KKKCEYATDR SGGSDITDSQ DGRGTSGAYS 60
61 SSSESPSPKA NAGIALTTQQ QQAAMMHTML MQMRLGSTTG ASTHVPSPLA SSSAGRSPLD 120
121 ANASDSESDV EEEEDEQIDP TVMQQTHDML MQESMCTI
|
| Detection Method: | |
| Confidence: | 1.11 |
| Match: | 1pk8A |
| Description: | Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP |
Matching Structure (courtesy of the PDB): |
|
