| Protein: | ceh-18 |
| Organism: | Caenorhabditis elegans |
| Length: | 542 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MNTLENTFQF LAEVFEANGG CLVTERVSPS LSGASKRKSR PVKRIITEDE VIPEEEVVEE 60
61 EEEEKVEQPS EEVTCPAMQV DATDAILASL RQIANNDLSE HCIRED
|
| Detection Method: |  |
| Confidence: | 14.0 |
| Match: | 1mr5A |
| Description: | Trypanosoma sialidase, C-terminal domain; Trypanosoma sialidase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [107-260] |
1 11 21 31 41 51
| | | | | |
1 EGNTSAEVFS NGNGEDMEQA GLAGTDLLRR VADMLQGNHN GSLNSHFLQQ QFAAFKETVD 60
61 PTPVSTNGNG LLTPITTQLS PLFTSTDAFN SPEKLLQAIM TPSLGFLGAN GLGASNSGLL 120
121 SSPLIAPSPT LLQSLMNTPT QPTASLTPKK AENR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [261-542] |
1 11 21 31 41 51
| | | | | |
1 PPVVSQTLKA SKRRLFDDTS RIEAASMSGD DRIDMNELEA FAQTFKKQRI KFGFTQGDVG 60
61 VALGKRYGTD FSQTTISRFE ALNLSFKNMC KLRPLLKEWL ADVEMAIEGG ATVTDLIDKK 120
121 TIHNGNHHTI HHVDIHETSI SNSISSVTAS SLLSREQHVK RRRKRTNLDM NQRNALDTFF 180
181 ALNPRPDHDK MTDIANSLEL DRDVVRVWFC NRRQKMRRVD EPIEGEMVTP SVSPVFPHFS 240
241 SMSALEQIQE AARLASCQAS NDDSDGTSGS PDAPSNDGCS DL
|
| Detection Method: | |
| Confidence: | 16.69897 |
| Match: | 1o4xA |
| Description: | TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| DNA binding | 5.51228466689923 | bayes_pls_golite062009 |
| nucleic acid binding | 5.37468811865033 | bayes_pls_golite062009 |
| transcription regulator activity | 5.05236457497789 | bayes_pls_golite062009 |
| transcription factor activity | 3.89464979825638 | bayes_pls_golite062009 |
| binding | 3.66501723413351 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.25218945600666 | bayes_pls_golite062009 |
| transcription activator activity | 3.15886611325686 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.32042014361691 | bayes_pls_golite062009 |
| transcription repressor activity | 1.75958281319075 | bayes_pls_golite062009 |
| protein binding | 1.55649304400241 | bayes_pls_golite062009 |
| transcription factor binding | 1.02788976342343 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.8718993114781 | bayes_pls_golite062009 |
| chromatin binding | 0.62573870961765 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.34211447646243 | bayes_pls_golite062009 |
| catalytic activity | 0.00446472034106909 | bayes_pls_golite062009 |
