| Protein: | nhr-237 |
| Organism: | Caenorhabditis elegans |
| Length: | 345 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-237.
| Description | E-value | Query Range |
Subject Range |
|
|
263.0 | [0..6] | [340..270] |
|
Region A: Residues: [1-73] |
1 11 21 31 41 51
| | | | | |
1 MEIPTPHQIC RVCGECADAV HFGALSCRAC AAFFRRKVAA GKPLSSSRCS GSCKLENQVL 60
61 RRLCAKCRYE KCV
|
| Detection Method: |  |
| Confidence: | 15.69897 |
| Match: | 2hanB |
| Description: | No description for 2hanB was found. |
| Term | Confidence | Notes |
| binding | 1.18770607371139 | bayes_pls_golite062009 |
| protein binding | 0.699012253331291 | bayes_pls_golite062009 |
|
Region A: Residues: [74-345] |
1 11 21 31 41 51
| | | | | |
1 QVGMRTSAVL SRLAVKSEPE FESLLDQIKL AYERLQMARK EAFHTEGHIP KMIKYQEMHK 60
61 MCSFDLQLVS QHFTSIFQSL TPISEAQKVT LGEYFTVPFV LLDGSYRSVE SDYIVFPNGD 120
121 YVDAQNIDAF YQNPDEKDES IGSSVASILE PYWRLHHQTL WEQMKKVKPS LIEFLVLSAF 180
181 IFWDFGLQGQ SEECIKVCNQ LRARVNAELS TYEKTFYTAG DYSLRVAEVV YLLQSVQKSL 240
241 AIMHSCKTLG YVFDFRDRTC PLNDNLEKTH SK
|
| Detection Method: | |
| Confidence: | 42.69897 |
| Match: | 1lbdA |
| Description: | LIGAND-BINDING DOMAIN OF THE HUMAN NUCLEAR RECEPTOR RXR-ALPHA |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.07679393058916 | bayes_pls_golite062009 |
| protein binding | 1.4692467191721 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 1.46824905227088 | bayes_pls_golite062009 |
| transcription regulator activity | 1.44313615088064 | bayes_pls_golite062009 |
| receptor activity | 1.27827487658808 | bayes_pls_golite062009 |
| DNA binding | 1.07558579137079 | bayes_pls_golite062009 |
| nucleic acid binding | 0.885522697705667 | bayes_pls_golite062009 |
| signal transducer activity | 0.875578759851886 | bayes_pls_golite062009 |
| molecular transducer activity | 0.875578759851886 | bayes_pls_golite062009 |
| transcription factor activity | 0.58279231726985 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.25945001118854 | bayes_pls_golite062009 |
| transcription activator activity | 0.15629984940944 | bayes_pls_golite062009 |
