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View Structure Prediction Details

Protein: pptr-2
Organism: Caenorhabditis elegans
Length: 561 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pptr-2.

Description E-value Query
Range
Subject
Range
gi|109084945 - gi|109084945|ref|XP_001112240.1| PREDICTED: similar to gamma isoform of regulatory subunit B56, prot...
895.0 [0..8] [554..271]

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Predicted Domain #1
Region A:
Residues: [1-473]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPADAPPPT NIGRTNTYGG DLISGPVIPR RERRQSSSMF NISQNRELQR LPAIKDADPS  60
   61 ERETLFIQKL RQCCVVFDFA NDALSDLKFK EVKRAALNEL VDHVSGAPKG SLSDAVYPEA 120
  121 IGMFSTNLFR PLSPPTNPIG AEFDPDEDEP TLEAAWPHLQ LVYEFFLRFL ECPDFQSQVA 180
  181 KRYIDQNFIL RLLMIMDSED PRERDFLKTT LHRIYGKFLG HRAYIRKQIN NIFYSFIYET 240
  241 ERHNGIAELL EILGSIINGF ALPLKEEHKT FLLRVLLPLH KVKSLSVYHP QLAYCVVQFI 300
  301 EKDSSLTEPV ISGMLRFWPK QHSPKEVMFL NELEEVLDVI EPNEFQKIMT PLFSQIARCV 360
  361 SSPHFQVAER ALYYWNNEYV MSLVADNARV IIPIMFPVLF KNSKSHWNKT IHGLIYNALK 420
  421 MFMEMNQKLF DECSQAYQKD RVQEKTLNEE KERIWNNIEK QAMGNPQYVE VKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2nppB
Description: No description for 2nppB was found.

Predicted functions:

Term Confidence Notes
binding 3.0667965351474 bayes_pls_golite062009
protein serine/threonine phosphatase activity 2.90442709223348 bayes_pls_golite062009
phosphoprotein phosphatase activity 2.43818477885422 bayes_pls_golite062009
protein phosphatase type 2A regulator activity 2.4262941420561 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.13472456858224 bayes_pls_golite062009
phosphatase regulator activity 1.88919819318597 bayes_pls_golite062009
protein phosphatase regulator activity 1.7842476658781 bayes_pls_golite062009
protein binding 1.73688475473996 bayes_pls_golite062009
phosphatase activity 1.47453833246612 bayes_pls_golite062009
phosphoric ester hydrolase activity 1.24670233688276 bayes_pls_golite062009
myosin phosphatase activity 1.2020405346133 bayes_pls_golite062009
nucleic acid binding 1.13208464017585 bayes_pls_golite062009
hydrolase activity 0.42501390959416 bayes_pls_golite062009
transcription regulator activity 0.385452858197632 bayes_pls_golite062009
DNA binding 0.309260217284589 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [474-561]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LFARFNPDEI ISSRQQNGVD ENMKTSTVLS KDEILKNAVG VSSMKNDMDF GPNHKQSDFP  60
   61 PDEQTTRALG EYKRHDPFLK KVTSTDEQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle