| Protein: | nhr-113 |
| Organism: | Caenorhabditis elegans |
| Length: | 341 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nhr-113.
| Description | E-value | Query Range |
Subject Range |
|
|
254.0 | [0..1] | [339..201] |
|
Region A: Residues: [1-98] |
1 11 21 31 41 51
| | | | | |
1 MDNKNDPCRI CNDSLTSGFH FGTSCCIACA AFFRRTVKNQ FTCNANNDCV ISFEKKFTCR 60
61 ACRYNNCLKA GMRKDYIRKI NSNYVPKQKC VNVDASRS
|
| Detection Method: |  |
| Confidence: | 19.0 |
| Match: | 2a66A |
| Description: | Human Liver Receptor Homologue DNA-Binding Domain (hLRH-1 DBD) in Complex with dsDNA from the hCYP7A1 Promoter |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [99-341] |
1 11 21 31 41 51
| | | | | |
1 IGTSSASSSS SESSPLVSPI IEKPIGKYSK ILKRYPQELL QFYVKEVEKT IANRRKNSSK 60
61 NILHAKSMNE LMVITAHQSG SAMEACINCP GVSKLHQKDI RVLHKYFQFL NVWLDSVREY 120
121 SMSDGAHYEI GVDRKLSEFI HQVRTTLGSS LANLKLNMYE YSAFKLFCIW NLKFHKTSTA 180
181 LKIVAQEHYE GVCSALRNYY ETQTKMDDFE IAIRIGDITL QIVTVSDIYH DFIKLLLNSG 240
241 ISI
|
| Detection Method: | |
| Confidence: | 30.0 |
| Match: | 1xdkB |
| Description: | Crystal Structure of the RARbeta/RXRalpha Ligand Binding Domain Heterodimer in Complex with 9-cis Retinoic Acid and a Fragment of the TRAP220 Coactivator |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.31508164334985 | bayes_pls_golite062009 |
| ligand-dependent nuclear receptor activity | 2.20996397516696 | bayes_pls_golite062009 |
| transcription regulator activity | 2.02157665604796 | bayes_pls_golite062009 |
| DNA binding | 1.47175550190876 | bayes_pls_golite062009 |
| signal transducer activity | 1.430912689846 | bayes_pls_golite062009 |
| molecular transducer activity | 1.430912689846 | bayes_pls_golite062009 |
| protein binding | 1.34648900580465 | bayes_pls_golite062009 |
| nucleic acid binding | 1.29377568150934 | bayes_pls_golite062009 |
| receptor activity | 1.17902442273252 | bayes_pls_golite062009 |
| transcription activator activity | 0.96843436755116 | bayes_pls_golite062009 |
| transcription factor activity | 0.92060883178562 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.67007540744134 | bayes_pls_golite062009 |
