YRC Public Data Repository - Protein Structure Prediction

Protein:	CE18888
Organism:	Caenorhabditis elegans
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18888.

Description	E-value	Query Range	Subject Range
gi\|114605208 - gi\|114605208\|ref\|XP_001160054.1\| PREDICTED: serine (or cysteine) proteinase inhibitor, clade B (oval...	244.0	[0..2]	[265..89]
gi\|109069435 - gi\|109069435\|ref\|XP_001091156.1\| PREDICTED: serine (or cysteine) proteinase inhibitor, clade B (oval...	243.0	[0..2]	[265..89]
gi\|74003798 - gi\|74003798\|ref\|XP_855782.1\| PREDICTED: similar to Cytoplasmic antiproteinase 3 (CAP3) (CAP-3) (Prot...	243.0	[0..2]	[265..89]
gi\|76678522 - gi\|76678522\|ref\|XP_588377.2\| PREDICTED: similar to SCCA2/SCCA1 fusion protein [Bos taurus]	242.0	[0..2]	[265..128]
gi\|123979742, gi... - gi\|60655129\|gb\|AAX32128.1\| serine or cysteine proteinase inhibitor clade B member 9 [synthetic const... SERPINB9 - serpin peptidase inhibitor, clade B (ovalbumin), member 9	241.0	[0..2]	[265..89]
gi\|30584889, gi\|... - gi\|61371906\|gb\|AAX43753.1\| serine or cysteine proteinase inhibitor clade B member 9 [synthetic const...	241.0	[0..2]	[265..89]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQDQLTSIL TTVGLNLMAK LTDNSRSVVI SPSEVALSVA KSTLKHCEPL PYELFQSDYE  60
   61 SEFRELIEQL ENFEAMKVNP SPPVWNFAIS EFKKKNFKLS NGKLKKMNFI WINLETNMEL 120
  121 SCEKTGAQMA QDKEFKVLSI PLAGDAGKFV VFFPENQEET IEESLKKLNT RKFQRLIDDL 180
  181 VPKFIHFEHP VFKIQSKFFI SENLTMTDRG LTHEKEFEVC HGENNDFRRG LLMDRCEYVP 240
  241 YIFRVNRPFI FCVVQNGVPV TMGIFDGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.30103
Match:	2gd4I
Description:	No description for 2gd4I was found.

Predicted functions:

Term	Confidence	Notes
enzyme regulator activity	0.28220517555637	bayes_pls_golite062009
enzyme inhibitor activity	0.24349606138594	bayes_pls_golite062009
peptidase inhibitor activity	0.242436550337669	bayes_pls_golite062009
endopeptidase inhibitor activity	0.21084713665576	bayes_pls_golite062009
serine-type endopeptidase inhibitor activity	0.17899306170801	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: