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View Structure Prediction Details

Protein: CE18278
Organism: Caenorhabditis elegans
Length: 591 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE18278.

Description E-value Query
Range
Subject
Range
PTPM_MOUSE, PTPR... - Receptor-type tyrosine-protein phosphatase mu OS=Mus musculus GN=Ptprm PE=2 SV=1, (P28828) Receptor-...
416.0 [0..5] [565..775]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRRKGTRGN SQDDQQASRR LAKKPSDEKV DEKDKKKGGV LKRLGFLLHN EKKEEVGSTQ  60
   61 KRRKPKRGTE RKRACSHPVW NPDKKIHFNN EKTHA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.0
Match: 2shpA
Description: Tyrosine phosphatase; Tyrosine phoshatase shp-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
insulin receptor binding 3.48393497211158 bayes_pls_golite062009
protein binding 3.19631993182765 bayes_pls_golite062009
binding 3.12724619324809 bayes_pls_golite062009
phosphoric ester hydrolase activity 2.76609604594837 bayes_pls_golite062009
phosphatase activity 2.39617614358425 bayes_pls_golite062009
phosphoprotein phosphatase activity 2.32814368667748 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.22704087268457 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 1.85015570449703 bayes_pls_golite062009
kinase activity 1.78069536883109 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.59739467025045 bayes_pls_golite062009
protein kinase activity 1.4654611643382 bayes_pls_golite062009
transcription regulator activity 1.38649262176488 bayes_pls_golite062009
molecular adaptor activity 1.33740973673697 bayes_pls_golite062009
nucleic acid binding 1.28138694351561 bayes_pls_golite062009
SH3/SH2 adaptor activity 1.2323381312171 bayes_pls_golite062009
transferase activity 1.19152443245584 bayes_pls_golite062009
DNA binding 1.17144894382542 bayes_pls_golite062009
phosphoinositide 3-kinase regulator activity 1.03150090191995 bayes_pls_golite062009
molecular transducer activity 0.999269271132931 bayes_pls_golite062009
signal transducer activity 0.999269271132931 bayes_pls_golite062009
insulin-like growth factor receptor binding 0.950445630788802 bayes_pls_golite062009
protein binding, bridging 0.83823250804321 bayes_pls_golite062009
protein phosphorylated amino acid binding 0.649814096718101 bayes_pls_golite062009
transcription factor activity 0.573315212617741 bayes_pls_golite062009
receptor binding 0.460399756639525 bayes_pls_golite062009
phosphotyrosine binding 0.311079584914389 bayes_pls_golite062009
insulin receptor substrate binding 0.29798436765753 bayes_pls_golite062009
protein tyrosine phosphatase activity 0.251558977399574 bayes_pls_golite062009
protein complex binding 0.19242065162232 bayes_pls_golite062009
phosphoprotein binding 0.16798254471727 bayes_pls_golite062009
kinase regulator activity 0.10704587503284 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [96-489]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IIPLKGDPLS DVQKKVFFKF ASDAVKKNPP EYSVEFMTKV KPYPGQPMER KIFDANPTKN  60
   61 RYKDVVCNDI TRVILSDGGD GDYIHANYVN GLNAPFILTQ GATAATVIDF WRMVVHTKTA 120
  121 YIVMLCEVME DGKAKCAQYY PEKAGEAMTF GAWTILCSLE DDKDANIIKR TLSVRNVDNG 180
  181 KEHILKHLHT KSWPDRCVPN STMALLRMLY IVRTASGPVT VHCSAGIGRT GTFVAIEACL 240
  241 QILTDGKELD LLGTCRALRN SRAGSIQVDI QYMALVQILI NYGKDNGYWD DSDLDDRVEL 300
  301 LTWNIQQFIQ TRGKVDHVPT TPSTPALNII PADAKPVPVV PKEATPHHSP AEKAQECMEK 360
  361 ICEKILKPIK KDKECKEHKS PKTEHPKECK DHPL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 107.0
Match: 2fh7A
Description: Crystal structure of the phosphatase domains of human PTP SIGMA
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [490-591]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLETRSSSED GPDMEDQKTQ ATQKVEIKEE TAAQNDNISM ISLPNEPLLS IPVVRKNSKD  60
   61 GNKDSCDTKE SKETKGHEKK NSKEGNFKLV KKQSANRSQY FL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle