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View Structure Prediction Details

Protein: cyl-1
Organism: Caenorhabditis elegans
Length: 480 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cyl-1.

Description E-value Query
Range
Subject
Range
gi|66911918 - gi|66911918|gb|AAH97120.1| Si:ch211-203b8.5 protein [Danio rerio]
235.0 [0..44] [407..9]

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Predicted Domain #1
Region A:
Residues: [1-360]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASFVEMRKL AEAKVQNMIR TIVKPKEQNG NVEPKKEEDE KFESTYKQNE NTQITPSSFG  60
   61 KRPLYSKVDI NCDKWLMTLD EESRLKIDNP PSLVDGLSKE TESELRYLGC ELIQQGAILL 120
  121 KLPQTAAATG QILFQRYYYQ KSFVRYHFEH AVQACLLLAS KIEEEPRRPR EVYNVFHRLE 180
  181 RLHRLQQSGH DINKETTRGM KPPAVDMNYI NTKQHMINSE RRILATLGFV VHVKHPHRLI 240
  241 VAYGHTLGIT QSRPDILQRS WNYMNDGLRT DIFMRYKPET IACACIFLAA RTVENPIALP 300
  301 STPFHWFEAF DTSDRDVEAI ALQLVGLYAR RTFPNWPRIK AELDALRSVK DAEMKAVKAK 360
  361 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.30103
Match: 2pk2A
Description: No description for 2pk2A was found.

Predicted functions:

Term Confidence Notes
cyclin-dependent protein kinase regulator activity 6.12919068656167 bayes_pls_golite062009
protein kinase regulator activity 2.90083336559452 bayes_pls_golite062009
kinase regulator activity 2.84789294954357 bayes_pls_golite062009
binding 2.4204867358489 bayes_pls_golite062009
transcription regulator activity 1.86024002251052 bayes_pls_golite062009
protein binding 1.47106731485576 bayes_pls_golite062009
kinase activity 1.38878672278174 bayes_pls_golite062009
nucleic acid binding 1.23878797237176 bayes_pls_golite062009
DNA binding 1.18961617410859 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 1.13015830171495 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 1.12685411405053 bayes_pls_golite062009
protein kinase activity 0.957590284872001 bayes_pls_golite062009
enzyme regulator activity 0.729629809946521 bayes_pls_golite062009
protein serine/threonine kinase activity 0.567809158275482 bayes_pls_golite062009
transcription factor activity 0.567104149291415 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.56301729141837 bayes_pls_golite062009
transferase activity 0.532488713136535 bayes_pls_golite062009
kinase binding 0.451409627821468 bayes_pls_golite062009
transcription factor binding 0.396734044657235 bayes_pls_golite062009
enzyme binding 0.145967754156613 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [361-480]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EIAENLAKMA PDGEKSTSTV TIGKDSRKVS PDRKNGTKDR GEADRGKKEK DRHRRRSNDR  60
   61 DGRGDRRDRD KDRGDRRKDE KKDRRKRTRS RSRDRKDKNR NRDVGKRYRK ESSTPPRSRR 120
  121 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle