YRC Public Data Repository - Protein Structure Prediction

Protein:	sedl-1
Organism:	Caenorhabditis elegans
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sedl-1.

Description	E-value	Query Range	Subject Range
gi\|157767027 - gi\|157767027\|ref\|XP_001666993.1\| Hypothetical protein CBG08181 [Caenorhabditis briggsae AF16] gi\|39592601, gi\|... - gi\|39592601\|emb\|CAE63678.1\| Hypothetical protein CBG08181 [Caenorhabditis briggsae], gi\|187032956\|em...	171.0	[0..1]	[141..1]
TPPC2_MOUSE - Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 SV=1 gi\|68163405, gi\|... - gi\|68163405\|ref\|NP_001020136.1\| trafficking protein particle complex 2 [Rattus norvegicus], gi\|62666...	168.0	[0..3]	[140..2]
TPPC2_PIG - Trafficking protein particle complex subunit 2 OS=Sus scrofa GN=TRAPPC2 PE=2 SV=2 TPPC2_BOVIN - Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1	168.0	[0..3]	[140..2]
gi\|13384832, gi\|... - gi\|13384832\|ref\|NP_079708.1\| trafficking protein particle complex 2 [Mus musculus], gi\|12835553\|dbj\|...	168.0	[0..3]	[140..2]
TPPC2_PONPY - Trafficking protein particle complex subunit 2 - Pongo pygmaeus (Orangutan) TPPC2_PONAB - Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 SV=1	167.0	[0..3]	[140..2]
tr\|M3X8U7\|M3X8U7... - Uncharacterized protein OS=Felis catus GN=TRAPPC2 PE=4 SV=1 TPPC2_CANLF - Trafficking protein particle complex subunit 2 OS=Canis lupus familiaris GN=TRAPPC2 PE=3 SV=1 gi\|149744249 - gi\|149744249\|ref\|XP_001489143.1\| PREDICTED: similar to Trafficking protein particle complex subunit ...	167.0	[0..3]	[140..2]
gi\|108875759, gi... - gi\|157118247\|ref\|XP_001653133.1\| mbp-1 interacting protein-2a [Aedes aegypti], gi\|108875759\|gb\|EAT39...	166.0	[0..3]	[140..2]
TRAPPC2, TRAPPC2P1 - trafficking protein particle complex 2, trafficking protein particle complex 2 pseudogene 1 gi\|109129945, gi... - gi\|109129945\|ref\|XP_001096697.1\| PREDICTED: trafficking protein particle complex 2 [Macaca mulatta],... gi\|90082471 - gi\|90082471\|dbj\|BAE90417.1\| unnamed protein product [Macaca fascicularis] gi\|114687808, gi... - gi\|114687812\|ref\|XP_001136163.1\| PREDICTED: similar to R29515_1 isoform 3 [Pan troglodytes], gi\|1146... gi\|208968153, gi... - gi\|208968153\|dbj\|BAG73915.1\| zinc finger protein 547 [synthetic construct], gi\|190691309\|gb\|ACE87429...	166.0	[0..3]	[140..2]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATKEFYFAI IGHCDQPIFE MDFPVGEKKT KESEGTRHLN HYIGHAALDI VDEHALTTSQ  60
   61 MYLKMVDKFN EWYVSAFVTA SRIRFIMLHT HRADEGIKQF FQEMYETYIK HAMNPFYEID 120
  121 DVIESPAFEQ KATLYGRKYL S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	2j3wA
Description:	No description for 2j3wA was found.

Predicted functions:

Term	Confidence	Notes
clathrin binding	2.46091145052374	bayes_pls_golite062009
protein-cysteine S-palmitoleyltransferase activity	2.09062141077479	bayes_pls_golite062009
protein-cysteine S-acyltransferase activity	2.09062141077479	bayes_pls_golite062009
binding	1.96298363185486	bayes_pls_golite062009
SNAP receptor activity	1.56904739000414	bayes_pls_golite062009
transporter activity	1.19620787652793	bayes_pls_golite062009
protein transporter activity	0.83435143456632	bayes_pls_golite062009
palmitoyltransferase activity	0.76687594030379	bayes_pls_golite062009
protein binding	0.690762864611134	bayes_pls_golite062009
substrate-specific transporter activity	0.326071696170609	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.131410992694836	bayes_pls_golite062009
pyrophosphatase activity	0.0936690070284361	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.0846345824909659	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.0820309452260982	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: