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View Structure Prediction Details

Protein: CE13267
Organism: Caenorhabditis elegans
Length: 557 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE13267.

Description E-value Query
Range
Subject
Range
gi|73987473 - gi|73987473|ref|XP_542180.2| PREDICTED: similar to nicalin [Canis familiaris]
389.0 [0..1] [545..330]

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Predicted Domain #1
Region A:
Residues: [1-557]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDEIIDFFR SPALLFYMTL MLTICVVNGS QQVGEVVETE FHAYRLHQYE ISGNIYGCKN  60
   61 YRVSYEAVSL GARTLRRTMV TTWRDLLTTD VDDMWALSTG AVLIFIPDNL DELNDIDRKA 120
  121 FIDLEAKLLS AKTDLAVYVA PFNDDAVSIL HDVNTRSEKA PTALQHLLQS LSGNTISITS 180
  181 SDQSPELPPS YKPLNIVGRL SSGDRAAPTI AFVAHYDTQS AVPGVSPGAD SNGSGIVALL 240
  241 ELLAVLSKFY DSPSTRPPYN ILFIWTAAGK LNYQGTRHWI DEYQKGFDSA DYAKSGLSRK 300
  301 DDRVDLAICI EAIGRKTGGF FMHAGKTPSE NSVAAQLLRR LNSISPKKNI ELVTKKISLT 360
  361 TVSAWEHEKF NIKRMPAITL STLPSPSDPA RNSILDLPSA LDEDELIDNI RLIGEAVLGY 420
  421 ILDLPESGPS SDSRVKSEAT MLSKDAVDKQ RVHHFIRQFA SRPRPVGDQR ATESITSNLA 480
  481 SVAAGYGNVF KSAVTITDAK AFGVTQNRLV AERVKPAVFE LVIAAGVFTY LSAFYYIATH 540
  541 SQNTIEGTVA AIRKSIF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 75.69897
Match: 2ootA
Description: No description for 2ootA was found.

Predicted functions:

Term Confidence Notes
binding 1.32879486130719 bayes_pls_golite062009
transmembrane receptor activity 0.494380623763342 bayes_pls_golite062009
transcription regulator activity 0.437703290467567 bayes_pls_golite062009
receptor activity 0.422941307819965 bayes_pls_golite062009
nucleic acid binding 0.331034243637565 bayes_pls_golite062009
hydrolase activity 0.268899853285984 bayes_pls_golite062009
DNA binding 0.253291282804265 bayes_pls_golite062009
signal transducer activity 0.0305928044064539 bayes_pls_golite062009
molecular transducer activity 0.0305928044064539 bayes_pls_golite062009
protein binding 0.00854198798870509 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle