| Protein: | lin-31 |
| Organism: | Caenorhabditis elegans |
| Length: | 237 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lin-31.
| Description | E-value | Query Range |
Subject Range |
|
|
186.0 | [0..6] | [237..354] |
|
|
184.0 | [0..16] | [235..349] |
|
|
176.0 | [0..2] | [237..108] |
|
|
173.0 | [0..1] | [237..22] |
|
|
173.0 | [0..2] | [237..108] |
|
|
170.0 | [0..6] | [237..163] |
|
Region A: Residues: [1-104] |
1 11 21 31 41 51
| | | | | |
1 MPRPGKDSYD EQKPPYSYIW LTYMAIQDSD DKMLPLTEIY KYIMDRFPFY RKNTQRWQNS 60
61 LRHNLSFNDC FIKIPRRADR PGKGSYWAVH PNASGMFENG SCLR
|
| Detection Method: |  |
| Confidence: | 36.69897 |
| Match: | 1d5vA |
| Description: | Adipocyte-transcription factor FREAC-11 (s12, fkh-14) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 5.55329976718261 | bayes_pls_golite062009 |
| DNA binding | 5.08959163553491 | bayes_pls_golite062009 |
| nucleic acid binding | 4.99681957904233 | bayes_pls_golite062009 |
| transcription factor activity | 4.33152142980289 | bayes_pls_golite062009 |
| transcription repressor activity | 3.85678231380989 | bayes_pls_golite062009 |
| transcription activator activity | 3.70589483230587 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 3.58179858678904 | bayes_pls_golite062009 |
| binding | 3.52874320222492 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.60738445921725 | bayes_pls_golite062009 |
| protein binding | 1.80415286835431 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 1.2723726467408 | bayes_pls_golite062009 |
| specific transcriptional repressor activity | 0.96257232341735 | bayes_pls_golite062009 |
| transcription factor binding | 0.85714789329232 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.66743181561551 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.322180400748724 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity, enhancer binding | 0.23177057841536 | bayes_pls_golite062009 |
|
Region A: Residues: [105-237] |
1 11 21 31 41 51
| | | | | |
1 RRKRFRARGG QDDDDDDFHH PAPSKISRKN PLPLLPEPPI TPPLLSSLFP NLPPSLPNFC 60
61 LFPPGMDPTK SLLLNPLSLL LMPHFLKNSS NFESSTPHSE TSEISGSGSS SSKTPTPEAG 120
121 FNSSFSIESI LSS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
