| Protein: | cif-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 390 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cif-1.
| Description | E-value | Query Range |
Subject Range |
|
|
241.0 | [0..2] | [380..75] |
|
Region A: Residues: [1-76] |
1 11 21 31 41 51
| | | | | |
1 MADTRELPVF AYIDDVKQLQ ELRQYLNKHD SVKLDPNGPS ETAQNMIEIC STLNVLPSWS 60
61 QDVDLVLNSI SSLIVV
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [77-287] |
1 11 21 31 41 51
| | | | | |
1 VPGEKCEPVV DSFIKNVAPQ FYKGTGWASH AGIAVRVLSN LYKGYSNFHT VQEKIFKALV 60
61 DMCAEARLIG ELECNLETLQ DRFNTWKTPV EGQREILRAV HRALLVDQRV DQAAKVMTAL 120
121 LGTYTEKDAA AARDDAMECV RTAVVDPKSF SFDHLERLSA VKALKTSDPL MFTALELFIS 180
181 GTLKDYKEFV AKNPKFVTEH LKVDETILLK K
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [288-390] |
1 11 21 31 41 51
| | | | | |
1 IRLLTLMSLA EEKNEISLDE LAKQLDILAD ETLEEFVIDA IQVNAISGKI NEMARTLIVS 60
61 SYQHRRFGTE QWVLLEKRLK VLIANLKQTH NNVHEVNQRI EAL
|
| Detection Method: | |
| Confidence: | 9.0 |
| Match: | 1ufmA |
| Description: | Solution structure of the PCI domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.95153041057228 | bayes_pls_golite062009 |
| DNA binding | 2.31496579551752 | bayes_pls_golite062009 |
| transcription regulator activity | 1.93897246216986 | bayes_pls_golite062009 |
| nucleic acid binding | 1.83610835165707 | bayes_pls_golite062009 |
| transcription factor activity | 1.75197559197272 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.04956049764478 | bayes_pls_golite062009 |
| protein binding | 0.776629952382685 | bayes_pls_golite062009 |
| transcription activator activity | 0.57320482892428 | bayes_pls_golite062009 |
| transcription repressor activity | 0.363241395353229 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.12259689863474 | bayes_pls_golite062009 |
