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View Structure Prediction Details

Protein: asp-6
Organism: Caenorhabditis elegans
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for asp-6.

Description E-value Query
Range
Subject
Range
gi|6180007 - gi|6180007|gb|AAF05750.1|AF191336_1 pregnancy-associated glycoprotein-11 [Capra hircus]
352.0 [0..1] [387..1]

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Predicted Domain #1
Region A:
Residues: [1-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTFILLAVL GLASASVHQH KIVWRESKKM GMIRTGQYPA YLEYQRNLRA VSPNVLANLP  60
   61 QNVNDFGDFE YLGNITIGTP DQGFIVVLDT GSSNLWIPGP TCKTNCKTKS KFDSTASSTF 120
  121 VKNGKSWTIQ YGSGDAAGIL GQDTVRFGAK GDSQLSVPTT TFGIASKISA DFKNDATDGI 180
  181 LGLAFTSLAV DGVVPPLINA INQGILDQPL FSVWLEHRGA ANNVGGGVFT YGAIDTTNCG 240
  241 ALVAYQPLSS ATYYQFKAAG FKLGSYSNTK TVDVISDTGT SFLGGPQSVV DGLAKAAGAT 300
  301 YDDFNEVYFI DCAAQPGTLD ITIGTNTYSI QPVNYIVDAG NGQCLFAAFP FDFGGFGPSW 360
  361 ILGDPFIRQY CNIYDIGNKR MGFAPSLQK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.39794
Match: 2psgA
Description: REFINED STRUCTURE OF PORCINE PEPSINOGEN AT 1.8 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
aspartic-type endopeptidase activity 7.9145950161796 bayes_pls_golite062009
aspartic-type peptidase activity 7.9145950161796 bayes_pls_golite062009
peptidase activity 5.78181196721293 bayes_pls_golite062009
endopeptidase activity 5.4888481808613 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 5.39972232367526 bayes_pls_golite062009
hydrolase activity 4.34796304893506 bayes_pls_golite062009
catalytic activity 1.54514410489082 bayes_pls_golite062009
binding 1.10054369202721 bayes_pls_golite062009
receptor binding 0.561225023505917 bayes_pls_golite062009
protein binding 0.193907750061394 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle