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View Structure Prediction Details

Protein: tkt-1
Organism: Caenorhabditis elegans
Length: 618 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tkt-1.

Description E-value Query
Range
Subject
Range
gi|168826063, gi... - gi|32029978|ref|ZP_00132914.1| COG0021: Transketolase [Haemophilus somnus 2336], gi|170717934|ref|YP...
610.0 [0..12] [616..5]

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Predicted Domain #1
Region A:
Residues: [1-618]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSEQLRND LEDAANRMRI SSIEMTCASK SGHPTSSTSA AEIMSTLFFS EMKYDVAEPK  60
   61 SASADRFVLS KGHACPILYA AWEEAGLLSH EQVLSLRKID SDIEGHPTPR LNFIDVATGS 120
  121 LGQGLGVATG MAYVGKYIDK ASYRVFCLLG DGESAEGSVW EAAAFASIYK LDNLVAIVDV 180
  181 NRLGQSQATS LGHDVETYKA RFAAFGFNAI IVNGHNVDEL LAAYETARST KGKPTAIIAK 240
  241 TLKGKGIEGI ENEDNWHGKP VPEGTVNAIK ARFHGSQKGK LVAQKPINDA PAIDLHVGSI 300
  301 KMAAPEYKKG DKVATRAAYG TALAKLGDAS PRVIGLDGDT KNSTFSDKLL KKHPDQFIEC 360
  361 FIAEQNLVGV AVGAQCRDRT IPFTSTFAAF FTRATDQIRM AAVSFANLKC VGSHVGVSIG 420
  421 EDGPSQMALE DLAIFRTIPG ATVFYPTDAV SAERATELAA NTKGVVFIRT GRPALPVLYD 480
  481 NEEPFHIGQA KVVKQSAQDK IVLVGSGVTL YESLKAAEEL EKEGIHATVI DPFTIKPLDG 540
  541 KTIAEHALKV GGRVVTTEDH YAAGGIGEAV SAALADYPTI RVRSLNVKEV PRSGPPDALV 600
  601 DMYGISARHI VAAVKNFQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 170.0
Match: 1qgdA
Description: Transketolase (TK), Pyr module; Transketolase (TK), PP module; Transketolase (TK), C-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transketolase activity 6.17852985073866 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor 2.93250853993668 bayes_pls_golite062009
pyruvate dehydrogenase activity 2.81702263447118 bayes_pls_golite062009
pyruvate dehydrogenase (acetyl-transferring) activity 2.6977837113283 bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups 2.21959520697519 bayes_pls_golite062009
binding 0.551586872853971 bayes_pls_golite062009
catalytic activity 0.545407789079971 bayes_pls_golite062009
thiamin pyrophosphate binding 0.297191393111081 bayes_pls_golite062009
acetolactate synthase activity 0.173822256668691 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle