| Protein: | CE08718 |
| Organism: | Caenorhabditis elegans |
| Length: | 396 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE08718.
| Description | E-value | Query Range |
Subject Range |
|
|
237.0 | [0..5] | [394..95] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MGETAAAVHD DADQKIIKQL EYYFGNINLP RDKFLQEKLK EDDGWVPITT MLNFNRLASI 60
61 SKDTEKIANA VKNSGSGIIS VSEDNQKIRR
|
| Detection Method: |  |
| Confidence: | 23.0 |
| Match: | 1ytyA |
| Description: | Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.04426015975991 | bayes_pls_golite062009 |
| binding | 1.99063774159045 | bayes_pls_golite062009 |
| DNA binding | 1.63968725174405 | bayes_pls_golite062009 |
| nucleic acid binding | 1.51035375793093 | bayes_pls_golite062009 |
| transcription factor activity | 1.16072080355661 | bayes_pls_golite062009 |
| transcription repressor activity | 0.55739080981393 | bayes_pls_golite062009 |
| transcription activator activity | 0.14130464856269 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.13573040816325 | bayes_pls_golite062009 |
|
Region A: Residues: [91-172] |
1 11 21 31 41 51
| | | | | |
1 NEENPVPENS LEYWQKIKHR TVYMKGFSTD TQLDDIIQWA NQFGETENVL MRRLKPGDRT 60
61 FKGSVFITYK TREEAEAAQK AE
|
| Detection Method: | |
| Confidence: | 14.154902 |
| Match: | 2dh7A |
| Description: | No description for 2dh7A was found. |
|
Region A: Residues: [173-396] |
1 11 21 31 41 51
| | | | | |
1 VKFGETELTK MMQDEYWTLK NKETKEARAA NKAAKSAKNT SEAIESEKAQ HAVRYEKGLI 60
61 LAVDGLGPDS TIDSIKTFFK LHGSVGYVAH ENGGKTAEIR FNNDSEGAQK AWDNAVAAGT 120
121 DGKVILQEAE LSARVLDGEE EEKYWTEFNA RKNQRQGGGR GGRGGRGGRG GRGGRGGRGG 180
181 RGGRGDRRGD KRSANDEGAD GSDEPKAKRT VFAEDGAPAA AAAE
|
| Detection Method: | |
| Confidence: | 12.221849 |
| Match: | 1hl6A |
| Description: | CG8781 protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.10590295737522 | bayes_pls_golite062009 |
| nucleic acid binding | 1.43479844212501 | bayes_pls_golite062009 |
| RNA binding | 0.863532182990129 | bayes_pls_golite062009 |
| protein binding | 0.303849616374798 | bayes_pls_golite062009 |
| mRNA binding | 0.0677652340577004 | bayes_pls_golite062009 |
