YRC Public Data Repository - Protein Structure Prediction

Protein:	ggt1
Organism:	Schizosaccharomyces pombe
Length:	630 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ggt1.

Description	E-value	Query Range	Subject Range
GGT1_RAT - Gamma-glutamyltranspeptidase 1 OS=Rattus norvegicus GN=Ggt1 PE=1 SV=4 gi\|57806 - gi\|57806\|emb\|CAA33483.1\| unnamed protein product [Rattus sp.]	668.0	[0..87]	[630..27]
GGT1_RAT - Gamma-glutamyltranspeptidase 1 precursor (EC 2.3.2.2) (Gamma-glutamyltransferase 1) (GGT 1) (CD224 a...	666.0	[0..87]	[630..27]
gi\|60810079 - gi\|60810079\|gb\|AAX36095.1\| gamma-glutamyltransferase 1 [synthetic construct]	663.0	[0..95]	[630..36]
GGT1 - gamma-glutamyltransferase 1 HGNC:4250\|MIM:61... - 1 gi\|109451900, gi... - gi\|123998549\|gb\|ABM86876.1\| gamma-glutamyltransferase 1 [synthetic construct], gi\|123993473\|gb\|ABM84...	663.0	[0..95]	[630..36]
gi\|114685460, gi... - gi\|114685464\|ref\|XP_001171206.1\| PREDICTED: gamma-glutamyltransferase 1 isoform 14 [Pan troglodytes]...	661.0	[0..95]	[630..36]
GGT1_MOUSE - Gamma-glutamyltranspeptidase 1 OS=Mus musculus GN=Ggt1 PE=1 SV=1	661.0	[0..87]	[630..27]
gi\|56129708, gi\|... - gi\|56415451\|ref\|YP_152526.1\| gamma-glutamyltranspeptidase [Salmonella enterica subsp. enterica serov... gi\|197364381, gi... - gi\|197364381\|ref\|YP_002144018.1\| gamma-glutamyltranspeptidase [Salmonella enterica subsp. enterica s...	659.0	[0..52]	[630..10]

Back

Predicted Domain #1

Region A:
Residues: [1-630]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGINTSSAQS SGAASIARSS VNVKSGNRHL SSNKKSATSA LEERASRPSI LVTFLVLAGT  60
   61 ILSLYIWPIL SPDLFFANQR CSFKYKNKGS QRVVVEGKNG VVATEEETCS QIGVGILKAG 120
  121 GNAVDAAIAS GICIGAVNSF SSGIGGGGFM LIRHPNGTAH SLNFRETAPA GASKNMFHGN 180
  181 STLSQVGGLS VAVPGEIAGY ERAWKMYGSL PWHKLFEPTI RLMRDGMPMP KELASRIRRP 240
  241 EFSYFKTHPD WSKIFAPEGV FLHVGEKFYR PALASTLEEI AKFGPEVFYT GKIAERLVKF 300
  301 VQQQGGILTM EDMANFSVVV EEPIYGNFYD REVITCGSPC SGEALILGLN VLSKVDLSEG 360
  361 TSILGCEMTD IGVHHLIETM KWMSAGRTVL ADPTFYNNTD HVEQLLSLEY ADEIRNNISN 420
  421 ERTFDFTHYK AEYDFPNDHG TTHLSVIDKD NMAVGLTASI NLMFGSQLLE PETGIILNDH 480
  481 MDDFASPGIV NAFGLSPSPY NFIAPGKRPQ SSAVPTILVY NGEVEMVLGG SGGSRIVTAV 540
  541 LDTIIKKYKW GKSLLESVES PRFHHQLMPN IVYIDETVEI EVLRALEKFG HIVDLIPVQY 600
  601 PFSEIQAVFR TNGTLYGLSD SRKQAVAAAY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2e0wA
Description:	No description for 2e0wA was found.

Predicted functions:

Term	Confidence	Notes
gamma-glutamyltransferase activity	2.74011689892782	bayes_pls_golite062009
peptidase activity	2.6421095563902	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	2.54551748261349	bayes_pls_golite062009
hydrolase activity	2.49721930187628	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.32542991193149	bayes_pls_golite062009
endopeptidase activity	2.29890628841519	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009
binding	0.752066499785082	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.0414061586026951	bayes_pls_golite062009
pyrophosphatase activity	0.00597086235697331	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: