YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC31F10.16
Organism:	Schizosaccharomyces pombe
Length:	679 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC31F10.16.

Description	E-value	Query Range	Subject Range
gi\|46116378, gi\|... - gi\|46116378\|ref\|XP_384207.1\| hypothetical protein FG04031.1 [Gibberella zeae PH-1], gi\|42550656\|gb\|E...	391.0	[0..9]	[678..6]
gi\|85082478 - gi\|85082478\|ref\|XP_956922.1\| hypothetical protein NCU04511 [Neurospora crassa OR74A] gi\|32406502, gi\|... - gi\|32406502\|ref\|XP_323864.1\| hypothetical protein [Neurospora crassa], gi\|28918003\|gb\|EAA27686.1\| co...	378.0	[0..9]	[678..6]
gi\|88180207, gi\|... - gi\|88180207\|gb\|EAQ87675.1\| conserved hypothetical protein [Chaetomium globosum CBS 148.51], gi\|11619...	367.0	[0..9]	[678..6]
gi\|38101493, gi\|... - gi\|39975495\|ref\|XP_369138.1\| hypothetical protein MGG_00106 [Magnaporthe grisea 70-15], gb\|EAA48448....	361.0	[0..9]	[678..6]
gi\|114194218, gi... - gi\|115391579\|ref\|XP_001213294.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	356.0	[0..9]	[678..6]
gi\|70999239, gi\|... - gi\|70999239\|ref\|XP_754341.1\| clathrin-coated vesiclec protein (Bud7) [Aspergillus fumigatus Af293], ... gi\|159127356 - gi\|159127356\|gb\|EDP52471.1\| clathrin-coated vesiclec protein (Bud7), putative [Aspergillus fumigatus...	356.0	[0..14]	[678..40]
gi\|83770823 - gi\|83770823\|dbj\|BAE60956.1\| unnamed protein product [Aspergillus oryzae] gi\|169763790 - gi\|169763790\|ref\|XP_001727795.1\| hypothetical protein [Aspergillus oryzae RIB40]	329.0	[0..9]	[678..6]
gi\|119186811, gi... - gi\|90302798\|gb\|EAS32429.1\| hypothetical protein CIMG_03453 [Coccidioides immitis RS], gi\|119186811\|r...	329.0	[0..9]	[678..6]
BCH1 - Member of the ChAPs family (Chs5p-Arf1p-binding proteins: Bch1p, Bch2p, Bud7p, Chs6p), that forms th... BCH1_YEAST - Protein BCH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BCH1 PE=1 SV=1	319.0	[0..8]	[678..6]
gi\|45199046, gi\|... - gi\|45199046\|ref\|NP_986075.1\| AFR528Wp [Ashbya gossypii ATCC 10895], gi\|44985121\|gb\|AAS53899.1\| AFR52... gi\|44985121 - gi\|44985121\|gb\|AAS53899.1\| AFR528Wp [Ashbya gossypii ATCC 10895]	312.0	[0..7]	[678..5]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSFFKDIP EFLETRVNES LDARSKSIAQ FKELGPPDQV NTIKVNAKNP SKEWGKDQDK  60
   61 SLFTKLFTPI ETLTFYVLLT SSKVGTYHFV SGV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DASSSASLAA YLNTLSYSLD KSQQWFGKGN AWRVSHGVYC CYNVFSQVDV RVEAKIPGGV  60
   61 DTYAIDENGQ KHIVDARMWT EAYMSEVLRS LLYSDDTNSR FAGHRRFNPI PNPDAELRFF 120
  121 EAAEQLFTLG YTLGSSSEVR VPTHVNNHLV RGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.39794
Match:	2c0lA
Description:	No description for 2c0lA was found.

Predicted Domain #3

Region A:
Residues: [247-679]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FAYLKQTCRY SAALNLFEKL RVSIPEVSVL LAELYLLMDH EVHAVRILHD SLLKQRMSAS  60
   61 LLIVQVKFLI SKERYDLALI CAKRAVHASP SEFATWACLA DVYLHLEDFK SALLALNSCP 120
  121 MYTYYERDAY PLPPSARAHL PFPVNFPKEE LEVENNAQNG YTVSTEITDP YLARLPSPSL 180
  181 RGTFAKAYEM LTLICAKIGW DELLRVRSAV FVMEEEYRSL NDITEGNASP DQNEVAEESV 240
  241 AEEVVGLDKP ETSVGSLPKN ATVQSKRLCE RWLDNLFMVL YEDLRVFTIW RAEYTHFKSQ 300
  301 GLAYRKAPAE WEILGEVAFR LHHRVEAVEA FCACLESMFS FKAWKTLLII YSEDNNIELV 360
  361 LTAIAKLTLY NYRWYQEYSP FLLEQMKNRI MQDGALKMKS ILASTRLDPY ILNLIHKLYF 420
  421 EWAIAFQIPG HEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.221849
Match:	1w3bA
Description:	The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha.
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.57186536498101	bayes_pls_golite062009
signal sequence binding	2.03820678175828	bayes_pls_golite062009
protein binding	1.65083457326273	bayes_pls_golite062009
transcription regulator activity	1.02070055347338	bayes_pls_golite062009
nucleic acid binding	1.01193875360949	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.95641230808714	bayes_pls_golite062009
UDP-glycosyltransferase activity	0.83187710003457	bayes_pls_golite062009
DNA binding	0.80346414607277	bayes_pls_golite062009
transcription factor activity	0.134824164012026	bayes_pls_golite062009
RNA binding	0.0901814112095951	bayes_pls_golite062009
syntaxin binding	0.0598606763736398	bayes_pls_golite062009
peroxisome targeting sequence binding	0.0468412220974996	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: