| Protein: | rct1 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 432 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rct1.
| Description | E-value | Query Range |
Subject Range |
|
|
177.0 | [0..1] | [432..1] |
|
|
175.0 | [0..1] | [429..89] |
|
|
175.0 | [0..1] | [432..1] |
|
|
174.0 | [0..1] | [432..1] |
|
|
173.0 | [0..1] | [431..1] |
|
|
162.0 | [0..1] | [432..1] |
|
|
162.0 | [0..1] | [411..1] |
|
|
160.0 | [0..1] | [403..1] |
|
|
159.0 | [0..1] | [322..1] |
|
Region A: Residues: [1-154] |
1 11 21 31 41 51
| | | | | |
1 MSVLIETTVG DLVIDLFVKE APKTCENFLK LCKLKYYNFC PFYNIQHNYT CQTGDPLGPT 60
61 GDGGRCVWNV LNKGTRFFKA EFNPSLVHNK MGLVSMSTAT ISSRDDKLLV CGSQFIITLS 120
121 DNLEGLDERY PIYGQVAEGF DTLLKINDAI CDEE
|
| Detection Method: |  |
| Confidence: | 18.69897 |
| Match: | 1xyhA |
| Description: | Crystal Structure of Recombinant Human Cyclophilin J |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| peptidyl-prolyl cis-trans isomerase activity | 3.73853378771688 | bayes_pls_golite062009 |
| cis-trans isomerase activity | 3.66963215732405 | bayes_pls_golite062009 |
| nucleic acid binding | 2.0418369369681 | bayes_pls_golite062009 |
| isomerase activity | 1.96529188741504 | bayes_pls_golite062009 |
| binding | 1.65866393331484 | bayes_pls_golite062009 |
| unfolded protein binding | 1.38124355054041 | bayes_pls_golite062009 |
| catalytic activity | 0.748655649755714 | bayes_pls_golite062009 |
| protein binding | 0.230077752280113 | bayes_pls_golite062009 |
|
Region A: Residues: [155-325] |
1 11 21 31 41 51
| | | | | |
1 GQPYRDIRIK HTIILDDPFE DPPDLVEPLR SPSPTPEQLA TVRIGENEQI ESETSEDKLQ 60
61 REKEMEAEAE AVTLEMIGDL PFAHVAPPEN VLFVCKLNPV TQDEDLELIF SRFGKIISCQ 120
121 VIRDKETGDS LQYAFIEFDN KESVEKAYFK MQNVLIDDSR IHVDFSQSVA R
|
| Detection Method: | |
| Confidence: | 29.0 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 4.92126426323641 | bayes_pls_golite062009 |
| binding | 3.64400841800969 | bayes_pls_golite062009 |
| RNA binding | 2.92438188845619 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.71887087575948 | bayes_pls_golite062009 |
| transcription regulator activity | 2.18211199677674 | bayes_pls_golite062009 |
| DNA binding | 1.98418556946403 | bayes_pls_golite062009 |
| mRNA binding | 1.94495589345842 | bayes_pls_golite062009 |
| protein binding | 1.12215421354121 | bayes_pls_golite062009 |
| transcription factor activity | 1.07843408116687 | bayes_pls_golite062009 |
| 0.84116054461637 | bayes_pls_golite062009 | |
| transcription elongation regulator activity | 0.764897709725891 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.632534695085793 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.383589644462932 | bayes_pls_golite062009 |
| structural molecule activity | 0.347575413104581 | bayes_pls_golite062009 |
|
Region A: Residues: [326-432] |
1 11 21 31 41 51
| | | | | |
1 YRQYYNSNRD RKRSSSRSDD REYHRRSDGR YDRSNYRDDY RHRRKERDHR DDQSSFRNER 60
61 FSNYYGDDRS YHKRRNTGNK NCDDHLRDKS PERRYRYDRR YRDDRYR
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
