| Protein: | vps41 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 886 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for vps41.
| Description | E-value | Query Range |
Subject Range |
|
|
503.0 | [0..24] | [828..27] |
|
|
502.0 | [0..24] | [828..53] |
|
|
502.0 | [0..24] | [828..27] |
|
|
501.0 | [0..24] | [828..28] |
|
|
500.0 | [0..24] | [828..28] |
|
Region A: Residues: [1-290] |
1 11 21 31 41 51
| | | | | |
1 MSVDESNSDS EIDSISSSDE DEEPKLIYER ITEKFQGCFM NDTISACAIS KEHFFFGSHN 60
61 GAIYIYQKNG ILLRKMILHS ASVVDLSVDL ESENLASCSM DGKMIISNIT TRETTVHDFK 120
121 RPLLSVAIDP YYSTRSSRQV LSGGRAGKVV LSEKGWLGNK DTVLQADCGA VYKISWYTTY 180
181 IAWASDLGIT VYSTEFGKVL GRLEPPKRLP NDEIFPYQLF WQSESRLVIG WSDQIMIVSI 240
241 QRSNVANELP KISLQALLEI DSIVSGVLML GFNILTLAYI ANVEDFTSAI
|
| Detection Method: |  |
| Confidence: | 63.39794 |
| Match: | 1vyhC |
| Description: | PAF-AH Holoenzyme: Lis1/Alfa2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| cytoskeletal protein binding | 2.20122168933317 | bayes_pls_golite062009 |
| binding | 1.99637157021613 | bayes_pls_golite062009 |
| actin binding | 1.40054662654509 | bayes_pls_golite062009 |
| protein binding | 1.21879977456466 | bayes_pls_golite062009 |
| transporter activity | 1.21549336905926 | bayes_pls_golite062009 |
| tubulin binding | 1.10875870970504 | bayes_pls_golite062009 |
| microtubule binding | 1.03769395387791 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.734793983890004 | bayes_pls_golite062009 |
| nucleic acid binding | 0.624115832843391 | bayes_pls_golite062009 |
| transcription repressor activity | 0.328276176504109 | bayes_pls_golite062009 |
| hydrolase activity | 0.28424525033024 | bayes_pls_golite062009 |
| transcription regulator activity | 0.282387003961579 | bayes_pls_golite062009 |
| dynein binding | 0.180120691665679 | bayes_pls_golite062009 |
| structural molecule activity | 0.0588151480189092 | bayes_pls_golite062009 |
| nucleoside-triphosphatase activity | 0.00585398682921312 | bayes_pls_golite062009 |
|
Region A: Residues: [291-357] |
1 11 21 31 41 51
| | | | | |
1 PSQRIEGCRP ELRLIDSSFK ELCGDAIGLA NYSRLQPSDY HLLPDPSSNS HSFVISPNDI 60
61 VYVRERN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [358-886] |
1 11 21 31 41 51
| | | | | |
1 QIDHVKYLVS KEMYAEAIDA VKKLPEIPPS LQISELAKKY IFHLLGKGQY KEAGMVIPSL 60
61 YNDNLAEWEQ WVFVFAENDH LEDIADFLPT GENHLSPLVY EMILAQYLAT DERTFNKKLH 120
121 EWPTMLYSVS TIRNATLKKF KENQKSSTLT ESLAFLYLED NMPIDAFHLY LKLHSELCID 180
181 LILQHNLYDE ARASVLLLML ISSKGKSSDT KSAMSSMLVQ HVHSFPPQEV IMQIHSVPQF 240
241 LYEYFCEFEL MYPNSLMEYG DLKLDVFAEF DRKRFFDFLV NTQCYSLDHA AQICKQYNYL 300
301 DELVYILGRM GNNKEALMLI INELLDIGRA IRYVKEQADR ELWDDLISYS LDKPEFICTL 360
361 LENIGTDENA RNLLSKIPPG TKLPHMKKSI SKLLADHQSQ VQLYQSCYKL FKNESISMAI 420
421 KYREQEQSGL EFLVKGKRSK NIFLTNLVKL DNPFNSFGDE QLDYNYRKRI PMIYDLRTKK 480
481 YIRPEDVRID TDDVFKDDKI AYFKTRMHLK PEVQMRNKLD LLMMLYKQT
|
| Detection Method: | |
| Confidence: | 85.69897 |
| Match: | 1xi4A |
| Description: | Clathrin D6 Coat |
Matching Structure (courtesy of the PDB): |
|
