YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC83.17
Organism:	Schizosaccharomyces pombe
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC83.17.

Description	E-value	Query Range	Subject Range
MBF1_DEBHA - Multiprotein-bridging factor 1 OS=Debaryomyces hansenii GN=MBF1 PE=3 SV=1 MBF1_DEBHA - Multiprotein-bridging factor 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NB...	130.0	[0..1]	[147..1]
MBF1_ASHGO - Multiprotein-bridging factor 1 OS=Ashbya gossypii GN=MBF1 PE=3 SV=1 MBF1_ASHGO - Multiprotein-bridging factor 1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL...	129.0	[0..2]	[148..3]
MBF1_CANGA - Multiprotein-bridging factor 1 OS=Candida glabrata GN=MBF1 PE=3 SV=1 MBF1_CANGA - Multiprotein-bridging factor 1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 062...	127.0	[0..1]	[148..1]
gi\|190407599 - gi\|190407599\|gb\|EDV10866.1\| multiprotein [Saccharomyces cerevisiae RM11-1a] gi\|151945381 - gi\|151945381\|gb\|EDN63624.1\| multiprotein bridging factor [Saccharomyces cerevisiae YJM789] MBF1 - Transcriptional coactivator that bridges the DNA-binding region of Gcn4p and TATA-binding protein Sp... MBF1_YEAST - Multiprotein-bridging factor 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MBF1 PE=1...	125.0	[0..1]	[148..1]
gi\|54641337, gi\|... - gi\|54641337\|gb\|EAL30087.1\| GA17985 [Drosophila pseudoobscura pseudoobscura], gi\|125977112\|ref\|XP_001... gi\|54641337\|gb\|E... - GA17985-PA [Drosophila pseudoobscura], GA17985 [Drosophila pseudoobscura pseudoobscura] gi\|195168135, gi... - gi\|195168135\|ref\|XP_002024887.1\| GL17867 [Drosophila persimilis], gi\|194108317\|gb\|EDW30360.1\| GL1786...	125.0	[0..1]	[148..1]
gi\|50312323, gi\|... - gi\|50312323\|ref\|XP_456195.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645331\|emb\|CAG9890...	124.0	[0..1]	[147..48]
gi\|220953732, gi... - gi\|220953732\|gb\|ACL89409.1\| mbf1-PA [synthetic construct], gi\|220943758\|gb\|ACL84422.1\| mbf1-PA [synt... gi\|190654830, gi... - gi\|194872614\|ref\|XP_001973047.1\| GG13561 [Drosophila erecta], gi\|190654830\|gb\|EDV52073.1\| GG13561 [D... gi\|194197164, gi... - gi\|195590845\|ref\|XP_002085155.1\| GD14645 [Drosophila simulans], gi\|194197164\|gb\|EDX10740.1\| GD14645 ... FBpp0294020, FBp... - The gene multiprotein bridging factor 1 is referred to in FlyBase by the symbol Dmel\mbf1 (CG4143, F...	124.0	[0..1]	[148..1]
gi\|195495092, gi... - gi\|38048595\|gb\|AAR10200.1\| similar to Drosophila melanogaster mbf1 [Drosophila yakuba], gi\|195495092...	124.0	[0..1]	[148..1]
gi\|2285788, gi\|1... - gi\|2285788\|dbj\|BAA21658.1\| Multiprotein bridging factor 1 [Bombyx mori], gi\|112984062\|ref\|NP_0010368...	122.0	[0..1]	[145..1]
MBF1_KLULA - Multiprotein-bridging factor 1 OS=Kluyveromyces lactis GN=MBF1 PE=3 SV=2 MBF1_KLULA - Multiprotein-bridging factor 1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NB...	122.0	[0..1]	[147..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDWDTVTKI GSRAGPGART HVAKTQSQIN SARRAGAIVG TEKKYATGNK SQDPAGQHLT  60
   61 KIDRENEVK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	32.769551
Match:	PF08523.1
Description:	No description for PF08523.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [70-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPSTTGRSVA QAIQKGRQAK GWAQKDLSQR INEKPQVVND YESGRAIPNQ QVLSKMERAL  60
   61 GIKLRGQNIG APLGGPKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.09691
Match:	1x57A
Description:	Solution structures of the HTH domain of human EDF-1 protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA binding	5.51228466689923	bayes_pls_golite062009
nucleic acid binding	5.37468811865033	bayes_pls_golite062009
transcription regulator activity	5.05236457497789	bayes_pls_golite062009
transcription factor activity	3.89464979825638	bayes_pls_golite062009
binding	3.66501723413351	bayes_pls_golite062009
sequence-specific DNA binding	3.25218945600666	bayes_pls_golite062009
RNA polymerase II transcription factor activity	3.22754992035091	bayes_pls_golite062009
transcription activator activity	3.15886611325686	bayes_pls_golite062009
transcription repressor activity	1.75958281319075	bayes_pls_golite062009
protein binding	1.55649304400241	bayes_pls_golite062009
chromatin binding	1.2739759748489	bayes_pls_golite062009
transcription factor binding	1.02788976342343	bayes_pls_golite062009
specific RNA polymerase II transcription factor activity	0.92393807212912	bayes_pls_golite062009
transcription cofactor activity	0.8718993114781	bayes_pls_golite062009
transcription coactivator activity	0.81316180547536	bayes_pls_golite062009
hydrolase activity	0.705005414525139	bayes_pls_golite062009
promoter binding	0.22765608166458	bayes_pls_golite062009
catalytic activity	0.00446472034106909	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: