YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC31G5.05c
Organism:	Schizosaccharomyces pombe
Length:	228 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC31G5.05c.

Description	E-value	Query Range	Subject Range
gi\|59712895, gi\|... - gi\|59712895\|ref\|YP_205671.1\| ribulose-phosphate 3-epimerase [Vibrio fischeri ES114], gi\|59480996\|gb\|...	206.0	[0..1]	[221..1]
gi\|12722019, gi\|... - gi\|15603484\|ref\|NP_246558.1\| ribulose-phosphate 3-epimerase [Pasteurella multocida subsp. multocida ...	206.0	[0..1]	[220..15]
gi\|88949336, gi\|... - gi\|88949336\|ref\|ZP_01151954.1\| Ribulose-phosphate 3-epimerase [Halorhodospira halophila SL1], gi\|889...	205.0	[0..1]	[223..1]
gi\|170718563, gi... - gi\|53728308\|ref\|ZP_00348123.1\| COG0036: Pentose-5-phosphate-3-epimerase [Haemophilus somnus 2336], g... gi\|23467805, gi\|... - gi\|23467805\|ref\|ZP_00123383.1\| COG0036: Pentose-5-phosphate-3-epimerase [Haemophilus somnus 129PT], ...	205.0	[0..1]	[226..1]
gi\|52078454, gi\|... - gi\|52078454\|gb\|AAH82474.1\| LOC494647 protein [Xenopus laevis], gi\|148230294\|ref\|NP_001087964.1\| hypo...	205.0	[0..5]	[225..6]
gi\|114583049 - gi\|114583049\|ref\|XP_001146078.1\| PREDICTED: ribulose-5-phosphate-3-epimerase isoform 9 [Pan troglody... RPE - ribulose-5-phosphate-3-epimerase gi\|190689795, gi... - gi\|190691163\|gb\|ACE87356.1\| ribulose-5-phosphate-3-epimerase protein [synthetic construct], gi\|19068... CCDS2388.1_1 - null gi\|109100810 - gi\|109100810\|ref\|XP_001109838.1\| PREDICTED: ribulose-5-phosphate-3-epimerase isoform 5 [Macaca mulat...	205.0	[0..5]	[225..6]
RPE_MOUSE - Ribulose-phosphate 3-epimerase OS=Mus musculus GN=Rpe PE=1 SV=1 gi\|149016015 - gi\|149016015\|gb\|EDL75296.1\| similar to Ribulose-5-phosphate-3-epimerase, isoform CRA_b [Rattus norve...	205.0	[0..5]	[225..6]
gi\|74005311 - gi\|74005311\|ref\|XP_536051.2\| PREDICTED: similar to Ribulose-phosphate 3-epimerase (Ribulose-5-phosph...	204.0	[0..5]	[225..6]
gi\|84376617, gi\|... - gi\|84390814\|ref\|ZP_00991506.1\| ribulose-phosphate 3-epimerase [Vibrio splendidus 12B01], gi\|84376617...	204.0	[0..1]	[220..1]
gi\|86147333, gi\|... - gi\|86147333\|ref\|ZP_01065647.1\| ribulose-phosphate 3-epimerase [Vibrio sp. MED222], gi\|85834898\|gb\|EA...	203.0	[0..1]	[220..1]

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Predicted Domain #1

Region A:
Residues: [1-228]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQAKIAPSL LAGDFANLEK EVGRMLKYGS DWLHVDVMDA QFVPNLTIGP IVVKAMRNHY  60
   61 TKEEAFFDCH LMVIEPERYI DQLADAGASL FCFHYEATEK HEEIISRAHE KGMLVGCALK 120
  121 PKTPVEVILP FVEKLDMVLV MTVEPGKGGQ SFMPECLPKV EFLRKKYPTL NVEVDGGLSL 180
  181 KTVDAAADAG ANVIVAGTAV FHAQSPEEVI SGLRNSVMKA QETKPWFK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.045757
Match:	1h1yA
Description:	D-ribulose-5-phosphate 3-epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribulose-phosphate 3-epimerase activity	3.28372503209224	bayes_pls_golite062009
catalytic activity	2.44231061702877	bayes_pls_golite062009
intramolecular oxidoreductase activity	1.86158562896415	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	1.36492964250879	bayes_pls_golite062009
isomerase activity	0.935800409577999	bayes_pls_golite062009
racemase and epimerase activity, acting on carbohydrates and derivatives	0.764608070506109	bayes_pls_golite062009
orotidine-5'-phosphate decarboxylase activity	0.758594564254247	bayes_pls_golite062009
binding	0.595171555788202	bayes_pls_golite062009
racemase and epimerase activity	0.288948763149344	bayes_pls_golite062009
carboxy-lyase activity	0.1100847613283	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: