| Protein: | rgf2 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1158 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rgf2.
| Description | E-value | Query Range |
Subject Range |
|
|
649.0 | [0..17] | [1142..119] |
|
|
640.0 | [0..6] | [1144..138] |
|
|
633.0 | [0..3] | [1148..54] |
|
|
632.0 | [0..24] | [1148..84] |
|
|
632.0 | [0..5] | [1153..237] |
|
|
628.0 | [0..3] | [1148..54] |
|
|
619.0 | [0..17] | [1148..146] |
|
|
618.0 | [0..38] | [1148..187] |
|
|
618.0 | [0..3] | [1148..54] |
|
|
616.0 | [0..325] | [1121..2] |
|
Region A: Residues: [1-183] |
1 11 21 31 41 51
| | | | | |
1 MLRNGAQNGN INSESHESFG KAAKGFRIFS SFSSSQKLFQ RRSSGSITHS PTALSSTTSL 60
61 NENDGNHFRP ASSLSFSPSS LSRKDSGPGD GLEVNKKNNF YRRSSSTDDF GISHARSRKE 120
121 IQSLGRPHTR QSFSVSDVSN GSSYPNIRKN SVHVNAPMPS FPEGSTAVLL KHHSGSKSAS 180
181 AIS
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [184-296] |
1 11 21 31 41 51
| | | | | |
1 NIAPSHSNST SSRRPYIHPA FLSQVAVEFR KRLNIGDRVK DGLLYKDAFL GSEAVDVLMH 60
61 IVRTTDRNLA LLLGRALDSQ KMFHDVTYSH RLRDSLKEVY QYRRIISPPP GLS
|
| Detection Method: | |
| Confidence: | 1.94 |
| Match: | 1fshA |
| Description: | Segment polarity protein Dishevelled-1 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.73671056234733 | bayes_pls_golite062009 |
| transcription regulator activity | 2.41707457507137 | bayes_pls_golite062009 |
| DNA binding | 2.18117896363198 | bayes_pls_golite062009 |
| nucleic acid binding | 2.11083019950216 | bayes_pls_golite062009 |
| transcription factor activity | 1.56137531585812 | bayes_pls_golite062009 |
| protein binding | 0.726445167461826 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.303801645888354 | bayes_pls_golite062009 |
| transcription activator activity | 0.136681432225981 | bayes_pls_golite062009 |
| transcription repressor activity | 0.0427811016336385 | bayes_pls_golite062009 |
|
Region A: Residues: [297-821] |
1 11 21 31 41 51
| | | | | |
1 SMDSNGSSIE NNFLYTKRRA NTSDSFDSVL SDSSTTPTIS SSVQVNSLAF ITSSLSAITK 60
61 EPEAPETEYN PHGVFTLLTE CYSSTCSRNR LCYSISCPRR LEQQARLHLK VQPVLSGGST 120
121 SITDKQEEDH RLWSENVPKQ VVDQIDVREW KRQEIIFEVI YTERDFVRDL EYIRDFWIKP 180
181 LSTSNVIPEN NRQQFIRCVF HNIMQIHAVN SRLSNALNRT QTLQPVVNTI GDLFLDYVPK 240
241 FEPFIKYGAN QAIAKFEFER EKSTNRNFAN YVHEVERLRE SRKLELNGYL TKPTTRLARY 300
301 PLLLSGVLKY TDKDNPDTEN IPRVIEMIRE FLTKLNYETG KTENRLSLLQ LNEQLSCSPA 360
361 DRAKLTLFDP SRLLIFKGVV KLKASSYSNG DTENDIHMFL LDNFLLLCKI KIQMKRRVHK 420
421 LHLRPLPLEL LSISYIEDSP SRGSLPRRPS SALLTNPISI TKSNPPPVKA YGLQLVFIGA 480
481 RGFSISLYLN TLIARDQWKQ HIEKQQDIIR KRHLVFESRG ICCQS
|
| Detection Method: | |
| Confidence: | 77.30103 |
| Match: | 2pz1A |
| Description: | No description for 2pz1A was found. |
|
Region A: Residues: [822-881] |
1 11 21 31 41 51
| | | | | |
1 WFTGNKLLCA VAYDAGRKLL FGTYKGLYIS SRKSNNGSCL EPIFKLQLPN ISQLDVIEEH 60
61
|
| Detection Method: | |
| Confidence: | 45.221849 |
| Match: | 1xdvA |
| Description: | Experimentally Phased Structure of Human the Son of Sevenless protein at 4.1 Ang. |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [882-997] |
1 11 21 31 41 51
| | | | | |
1 NVLLLLAEKI LYELPLDALD SVEQINSKSL RRVTGHVSFV KTGFCMQRIL VCAVKSTVLN 60
61 TTLRIYEADR ALKNKKTQSL KKPFGNQATL KIFTEVQMPM EALSVHFLKT KLCVGS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [998-1158] |
1 11 21 31 41 51
| | | | | |
1 FKGFDIISLE NAVFQSLLNP ADTSFRFLEK REDIRPIAMF RLRGEFLLCY SDFAFFVNTN 60
61 GWKSRQSWMI NWEGQPQGCA LCYPYILAFE PDFIEIRNAE TAELVQIIMG QNIKLLTDGR 120
121 GLISEGGEIL YSTEPIPFSS GENPIVHSLI LPPANAAGPA L
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
