YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC30C2.04
Organism:	Schizosaccharomyces pombe
Length:	450 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC30C2.04.

Description	E-value	Query Range	Subject Range
SYMC_ARATH - Methionine--tRNA ligase, cytoplasmic OS=Arabidopsis thaliana GN=At4g13780 PE=2 SV=1	220.0	[0..43]	[449..393]
gi\|1002712 - gi\|1002712\|gb\|AAC49072.1\| G4p1	209.0	[0..81]	[449..8]
SYM_ORYSA - (Q9ZTS1) Probable methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA ligase) (MetRS)	209.0	[0..41]	[449..393]
gi\|115468260, gi... - gi\|115468260\|ref\|NP_001057729.1\| Os06g0508700 [Oryza sativa (japonica cultivar-group)], gi\|113595769...	207.0	[0..41]	[449..387]
gi\|71017621, gi\|... - gi\|71017621\|ref\|XP_759041.1\| hypothetical protein UM02894.1 [Ustilago maydis 521], ref\|XP_400509.1\| ...	201.0	[0..87]	[450..86]
SYYC_RAT - Tyrosine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Yars PE=2 SV=3	198.0	[0..199]	[450..286]
gi\|26352830 - gi\|26352830\|dbj\|BAC40045.1\| unnamed protein product [Mus musculus]	197.0	[0..234]	[449..114]

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Predicted Domain #1

Region A:
Residues: [1-383]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLWAKEFC VLKYPYKLFI THKFSYLLRF ETVTLNNIRS PQFYAKLTFS HHQPTVSGTM  60
   61 STELKFISKY LQISIPETKE GPVSSLFKAV SEQKPELLGN TDFEKAQILE WTTKAFSPIE 120
  121 TQSIVEQLDE FLKSSTFIAQ DSGISVADLA VYARIHSYIC GLSAKEGYKL NNVCRWFDFI 180
  181 QHQESVMEAA NSMSMKLANI DLNAPKIQRP SVIKKDKKEK KEGKPSQEAS VKSVEKAPKG 240
  241 LEGAKKEKQN KKEKKDKKDK KDKKEKAPKE PPKAATPVPS MIDFRIGFIE KAVKHPNADS 300
  301 LYVSTIHCGD AEGPRTVCSG LVKYIPLEQM QQRKVIVVAN LKPVNMRSVK SQAMVFCASS 360
  361 PDKSVVEFVL PPENAEIGDR LTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.30103
Match:	1rqgA
Description:	Methionyl-tRNA synthetase from Pyrococcus abyssi
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ligase activity, forming carbon-oxygen bonds	7.22739538544605	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	7.22739538544605	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	7.21678612388154	bayes_pls_golite062009
ligase activity	5.98606099120849	bayes_pls_golite062009
isoleucine-tRNA ligase activity	3.76808520367507	bayes_pls_golite062009
catalytic activity	1.41356903593784	bayes_pls_golite062009
arginine-tRNA ligase activity	1.15514226827836	bayes_pls_golite062009
binding	1.12496911405027	bayes_pls_golite062009
protein binding	0.341429946042706	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [384-450]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGFDTEEPEA QLNPKRKIWE AIQPGFTSGE DLICGYKDES GLHRLFVKGK KDLGFCKAQT  60
   61 VVNGTLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.30103
Match:	1eujA
Description:	EMAP II
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: