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View Structure Prediction Details

Protein: SPBC28F2.11
Organism: Schizosaccharomyces pombe
Length: 310 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC28F2.11.

Description E-value Query
Range		 Subject
Range
gi|109511369, gi... - gi|109514150|ref|XP_001067329.1| PREDICTED: similar to High mobility group protein 4 (HMG-4) (High m...
 154.0 [0..15] [205..360]
gi|76609479 - gi|76609479|ref|XP_610926.2| PREDICTED: similar to high-mobility group box 3 [Bos taurus]
 152.0 [0..7] [214..341]
gi|91080287 - gi|91080287|ref|XP_973934.1| PREDICTED: similar to High mobility group protein DSP1 (Dorsal switch p...
 147.0 [0..16] [190..684]
gi|38049113 - gi|38049113|gb|AAR10364.1| sex determining region Y protein [Odobenus rosmarus]
 141.0 [0..99] [287..34]
SRY_HALGR - Sex-determining region Y protein OS=Halichoerus grypus GN=SRY PE=3 SV=2
 140.0 [0..96] [291..31]
SRY_PHOLR - Sex-determining region Y protein OS=Phoca largha GN=SRY PE=3 SV=1
SRY_PHOVI - Sex-determining region Y protein OS=Phoca vitulina GN=SRY PE=3 SV=1
 140.0 [0..96] [291..31]
SRY_PUSHI - Sex-determining region Y protein OS=Pusa hispida GN=SRY PE=3 SV=1
 140.0 [0..96] [291..31]
gi|85719141 - gi|85719141|dbj|BAE78533.1| sex determining region Y [Rangifer tarandus]
 139.0 [0..79] [291..14]
SRY_HYDLE - Sex-determining region Y protein OS=Hydrurga leptonyx GN=SRY PE=3 SV=1
 139.0 [0..96] [287..31]

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Predicted Domain #1
Region A:
Residues: [1-109] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQNSTQLEK ISGSFTRLAE AFQLALTACR EIEESLPSIL GEKSEVSKPF KPAVTDPSNA  60
   61 KKEINMAIES PSKKATSPKK ATPAAVAPVE ATSAVDTSEA VASMTPNKR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [110-310] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KARDPAQPKR PPSAYNLFQK NQRSEIKESL GEKSNDVKEV NKAMHEKWGS LSEDDRKTYE  60
   61 EEASKLREAY EEEMAAYNAS KENASVADSR VTAEETSTKP SEDLSSPTKK DLIDFSETRP 120
  121 LAQASRATPD IKEQHAKKPK RKHTRSTVPT SNVEPVSQPQ PSPDKIVSSP NPPSAKREKK 180
  181 KRRKSSMSSS ITTPPTAKVA N

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.69897
Match: 2gzkA
Description: No description for 2gzkA was found.

Predicted functions:

Term Confidence Notes
binding 3.1918149935012 bayes_pls_golite062009
DNA binding 2.9192628885142 bayes_pls_golite062009
nucleic acid binding 2.69023297073035 bayes_pls_golite062009
transcription regulator activity 2.58116094906635 bayes_pls_golite062009
transcription factor activity 1.78719688305492 bayes_pls_golite062009
sequence-specific DNA binding 1.45429159567789 bayes_pls_golite062009
transcription repressor activity 1.20795951017807 bayes_pls_golite062009
protein binding 1.131658134984 bayes_pls_golite062009
transcription factor binding 0.3855089242113 bayes_pls_golite062009
chromatin binding 0.26686706452968 bayes_pls_golite062009
RNA polymerase II transcription factor activity 0.1389551657237 bayes_pls_golite062009
transcription activator activity 0.0268189092037101 bayes_pls_golite062009
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