YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC1709.10c
Organism:	Schizosaccharomyces pombe
Length:	68 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC1709.10c.

Description	E-value	Query Range	Subject Range
gi\|29654798, gi\|... - gi\|29654798\|ref\|NP_820490.1\| copper-exporting ATPase [Coxiella burnetii RSA 493], gi\|29542066\|gb\|AAO...	78.0	[0..2]	[68..9]
gi\|94491843 - gi\|94491843\|ref\|ZP_01299053.1\| hypothetical protein CburD_01001241 [Coxiella burnetii Dugway 7E9-12]	78.0	[0..9]	[68..1]
gi\|95926873 - gi\|95926873\|ref\|ZP_01309644.1\| hypothetical protein CburR_01001335 [Coxiella burnetii RSA 331]	78.0	[0..9]	[68..1]
gi\|37527684, gi\|... - gi\|37527684\|ref\|NP_931028.1\| copper exporting ATPase [Photorhabdus luminescens subsp. laumondii TTO1...	77.0	[0..8]	[67..184]
gi\|77380892, gi\|... - gi\|77456889\|ref\|YP_346394.1\| copper-translocating P-type ATPase [Pseudomonas fluorescens Pf0-1], gi\|...	76.0	[0..2]	[65..72]
gi\|92890059 - gi\|92890059\|gb\|ABE90127.1\| Heavy metal transport/detoxification protein [Medicago truncatula]	75.0	[0..1]	[63..7]
gi\|126097523, gi... - gi\|126208731\|ref\|YP_001053956.1\| copper-transporting P-type ATPase [Actinobacillus pleuropneumoniae ... gi\|32034997 - gi\|32034997\|ref\|ZP_00135075.1\| COG2217: Cation transport ATPase [Actinobacillus pleuropneumoniae ser...	75.0	[0..8]	[68..11]
gi\|115421723, gi... - gi\|187477137\|ref\|YP_785161.1\| copper-transporting P-type ATPase [Bordetella avium 197N], gi\|11542172...	75.0	[0..3]	[66..61]
gi\|16418854, gi\|... - gi\|16763733\|ref\|NP_459348.1\| putative cation transport ATPase [Salmonella typhimurium LT2], gi\|16418... gi\|205329472, gi... - gi\|205329472\|gb\|EDZ16236.1\| copper-translocating P-type ATPase [Salmonella enterica subsp. enterica ... lcl\|NC_016856.1_... - [gene=STM14_0412] [protein=putative cation transport ATPase] [protein_id=YP_005236028.1] [location=3...	75.0	[0..8]	[66..17]
gi\|27452914, gi\|... - gi\|34902222\|ref\|NP_912457.1\| Hypothetical protein [Oryza sativa (japonica cultivar-group)], gi\|27452...	75.0	[0..2]	[62..64]

Back

Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYQFNVAMA CDGCKNAIDR VLTRLGVEDK SISVEKQEVI VTTDKPYELV EQTIKKTGKE  60
   61 VRSGKVLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.09691
Match:	1aw0A
Description:	FOURTH METAL-BINDING DOMAIN OF THE MENKES COPPER-TRANSPORTING ATPASE, NMR, 20 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
copper chaperone activity	6.14761367748172	bayes_pls_golite062009
metallochaperone activity	5.42894566783157	bayes_pls_golite062009
copper ion binding	5.41725082570189	bayes_pls_golite062009
copper-dependent protein binding	4.95395467138629	bayes_pls_golite062009
copper ion transmembrane transporter activity	4.35398003989182	bayes_pls_golite062009
copper-exporting ATPase activity	4.01340421656566	bayes_pls_golite062009
copper-transporting ATPase activity	3.98014937932947	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	3.67313485213724	bayes_pls_golite062009
metal ion transmembrane transporter activity	3.36143792136115	bayes_pls_golite062009
superoxide dismutase copper chaperone activity	3.30291073809164	bayes_pls_golite062009
cation transmembrane transporter activity	3.07976644601593	bayes_pls_golite062009
ion transmembrane transporter activity	3.00431429991351	bayes_pls_golite062009
binding	2.93936761631807	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	2.81498319767782	bayes_pls_golite062009
metal ion binding	2.69806984896689	bayes_pls_golite062009
cation binding	2.69806984896689	bayes_pls_golite062009
ion binding	2.69078950610234	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.64028711724976	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.63703148987083	bayes_pls_golite062009
transition metal ion binding	2.52520930681159	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.38802353099961	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.89914790023437	bayes_pls_golite062009
protein binding	0.989113446856899	bayes_pls_golite062009
substrate-specific transporter activity	0.841996187774093	bayes_pls_golite062009
nucleoside-triphosphatase activity	0.508360443861132	bayes_pls_golite062009
pyrophosphatase activity	0.470327716716451	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	0.452477805627897	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	0.45132236262635	bayes_pls_golite062009
ATPase activity	0.392266185712579	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: