YRC Public Data Repository - Protein Structure Prediction

Protein:	atp4
Organism:	Schizosaccharomyces pombe
Length:	244 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for atp4.

Description	E-value	Query Range	Subject Range
ATPF_NEUCR - ATP synthase subunit 4, mitochondrial OS=Neurospora crassa GN=atp-4 PE=3 SV=1 ATPF_NEUCR - ATP synthase subunit 4, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708...	255.0	[0..3]	[244..8]
gi\|118795248, gi... - gi\|118795248\|ref\|XP_322024.3\| ENSANGP00000012069 [Anopheles gambiae str. PEST], gi\|116116680\|gb\|EAA0...	253.0	[0..16]	[244..1]
gi\|148234340, gi... - gi\|6911053\|gb\|AAF31360.1\| ATP synthase subunit B [Xenopus laevis], gi\|28981424\|gb\|AAH48772.1\| MGC533...	252.0	[0..7]	[244..6]
AT5F1_PONAB - ATP synthase F(0) complex subunit B1, mitochondrial OS=Pongo abelii GN=ATP5F1 PE=2 SV=1 AT5F1_PONPY - ATP synthase B chain, mitochondrial precursor - Pongo pygmaeus (Orangutan)	251.0	[0..14]	[244..17]
AT5F1_BOVIN - ATP synthase F(0) complex subunit B1, mitochondrial OS=Bos taurus GN=ATP5F1 PE=1 SV=2	251.0	[0..12]	[244..15]
gi\|89272892, gi\|... - gi\|89272892\|emb\|CAJ82967.1\| ATP synthase, H+ transporting, mitochondrial F0 complex, subunit b, isof...	251.0	[0..7]	[244..6]
gi\|116192455, gi... - gi\|88181858\|gb\|EAQ89326.1\| ATP synthase subunit 4, mitochondrial precursor [Chaetomium globosum CBS ...	250.0	[0..3]	[238..8]
gi\|67970461 - gi\|67970461\|dbj\|BAE01573.1\| unnamed protein product [Macaca fascicularis] gi\|109013523, gi... - gi\|109013526\|ref\|XP_001105607.1\| PREDICTED: ATP synthase, H+ transporting, mitochondrial F0 complex,...	248.0	[0..7]	[244..10]
gi\|73959885 - gi\|73959885\|ref\|XP_537027.2\| PREDICTED: similar to ATP synthase B chain, mitochondrial precursor [Ca...	245.0	[0..12]	[244..15]

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Predicted Domain #1

Region A:
Residues: [1-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKLFCLRS FPSVQRTAWQ RLVLPSTRKF SLTPTTFDKT PSGRIPPDQK AANIISSVPS  60
   61 TSLLTKSGVL TVTAAALATA ISKGIYVVND ESIVVASFLG LVGVFGTLGR KAYNEWSDKT 120
  121 IAKIGGIMQA ARNDHTSAIR ERIDQVASLQ EVESVTQALF HTSKETARME AEIFELEQRV 180
  181 ALAKEAKSVL DSWVHHEANV RAEQQERLVE DVLARVNSKV STQKFQQDAL NESLGEIEKV 240
  241 LASA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.30103
Match:	2clyA
Description:	No description for 2clyA was found.

Predicted functions:

Term	Confidence	Notes
hydrogen ion transmembrane transporter activity	9.75824095339252	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	8.02996687028513	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	7.03421298777104	bayes_pls_golite062009
hydrogen-exporting ATPase activity, phosphorylative mechanism	6.33533983608004	bayes_pls_golite062009
cation transmembrane transporter activity	3.43905785379115	bayes_pls_golite062009
ion transmembrane transporter activity	3.40493178308083	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.11087315592201	bayes_pls_golite062009
transporter activity	2.33132024466294	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.14184902122852	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of ions	1.91129736413093	bayes_pls_golite062009
nucleoside-triphosphatase activity	1.68240669590269	bayes_pls_golite062009
pyrophosphatase activity	1.61544861060476	bayes_pls_golite062009
ATPase activity	1.60552572277149	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides	1.5982352071671	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	1.5958855657846	bayes_pls_golite062009
transmembrane transporter activity	1.51271412556287	bayes_pls_golite062009
substrate-specific transporter activity	1.35431931487507	bayes_pls_golite062009
binding	1.24770939036016	bayes_pls_golite062009
protein binding	1.15544550245769	bayes_pls_golite062009
primary active transmembrane transporter activity	0.907643434530535	bayes_pls_golite062009
P-P-bond-hydrolysis-driven transmembrane transporter activity	0.90151467619641	bayes_pls_golite062009
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	0.873541340643087	bayes_pls_golite062009
ATPase activity, coupled to transmembrane movement of substances	0.870099443464063	bayes_pls_golite062009
ATPase activity, coupled to movement of substances	0.870012300409237	bayes_pls_golite062009
active transmembrane transporter activity	0.869408183980935	bayes_pls_golite062009
catalytic activity	0.67288476528593	bayes_pls_golite062009
hydrolase activity	0.636687378087875	bayes_pls_golite062009
ATPase activity, coupled	0.423824294580682	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: