| Protein: | taf4 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 365 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for taf4.
| Description | E-value | Query Range |
Subject Range |
|
|
326.0 | [0..20] | [343..535] |
|
|
303.0 | [0..19] | [343..480] |
|
|
294.0 | [0..34] | [343..626] |
|
Region A: Residues: [1-123] |
1 11 21 31 41 51
| | | | | |
1 MDLNNPPSKR FGDDDDIPAN KRPKNEEYPE IPGYLGNRKP SYTQNPNSGP GKLHYASPRP 60
61 NNVSSSVGVA SGGDRQEADQ LQDALISCGI QLKEEELNLS TSFYDPSSLN TFALTTEDRS 120
121 RKS
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.278 | 0.951 | transcription initiation from RNA polymerase II promoter | a.4.5 | "Winged helix" DNA-binding domain |
|
Region A: Residues: [124-275] |
1 11 21 31 41 51
| | | | | |
1 DFLNSFVLMQ TVSNIVNLHR LKSMDSDIHA LISMAVRDYL ANLLQKMIVE SHHRTSQLHT 60
61 DNYKQVDNVR QTLANFAYKE YESEERRRTV LNIRRAEHEA RLAELNSAST NEEGSSRRRK 120
121 EQSSSAAAKN ISEDAQNRMT NATASIMAGS AL
|
| Detection Method: | |
| Confidence: | 19.221849 |
| Match: | 1h3oA |
| Description: | TAF(II)-135, (TAF(II)-130, hTAF4), histone fold domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| general RNA polymerase II transcription factor activity | 9.25279783093877 | bayes_pls_golite062009 |
| DNA binding | 4.49118409263799 | bayes_pls_golite062009 |
| nucleic acid binding | 4.35201412176948 | bayes_pls_golite062009 |
| transcription regulator activity | 4.08606081850613 | bayes_pls_golite062009 |
| transcription initiation factor activity | 3.96621818094279 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 3.28941584139552 | bayes_pls_golite062009 |
| binding | 3.27510691458843 | bayes_pls_golite062009 |
| transcription factor activity | 2.51581622888695 | bayes_pls_golite062009 |
| transcription activator activity | 1.25487495162413 | bayes_pls_golite062009 |
| transcription factor binding | 1.15204005455906 | bayes_pls_golite062009 |
| transcription coactivator activity | 1.1297723528047 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 1.10331930589736 | bayes_pls_golite062009 |
| protein binding | 1.07873333188144 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.01502031330902 | bayes_pls_golite062009 |
| transcription repressor activity | 0.72554769377984 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.0852726470007639 | bayes_pls_golite062009 |
| transferase activity, transferring phosphorus-containing groups | 0.0792897588268993 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.0736756545988504 | bayes_pls_golite062009 |
|
Region A: Residues: [276-365] |
1 11 21 31 41 51
| | | | | |
1 PSGGKKYSWM ATDMTPMTPA VGGGFGIRKK DSNSLKPSSR DGVLPLQQEE KGIITIRDAL 60
61 AVLEMDREGA GRIFGRGAKA MMRAYIRLKD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
